Wall clock time and date at job start Tue Mar 31 2020 11:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00186 * 2 1 4 4 H 1.48499 * 109.47494 * 89.99520 * 3 2 1 5 5 H 1.48502 * 109.47096 * 209.99893 * 3 2 1 6 6 H 1.48504 * 109.47236 * 329.99446 * 3 2 1 7 7 C 1.37886 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99984 * 5.13851 * 7 2 1 9 9 C 1.50706 * 119.99589 * 185.13516 * 7 2 1 10 10 O 1.42890 * 112.93948 * 52.41060 * 9 7 2 11 11 C 1.53936 * 113.73345 * 280.69653 * 9 7 2 12 12 N 1.47951 * 86.17971 * 221.92550 * 11 9 7 13 13 C 1.46905 * 110.99822 * 137.58619 * 12 11 9 14 14 C 1.50706 * 109.47340 * 70.63960 * 13 12 11 15 15 N 1.28997 * 124.90687 * 89.69063 * 14 13 12 16 16 C 1.31811 * 117.13308 * 179.84360 * 15 14 13 17 17 C 1.33728 * 114.47252 * 0.44816 * 16 15 14 18 18 Br 1.89092 * 126.04594 * 179.80422 * 17 16 15 19 19 S 1.70968 * 124.90331 * 270.00296 * 14 13 12 20 20 C 1.47949 * 90.76613 * 24.69333 * 12 11 9 21 21 H 0.96998 * 120.00034 * 174.95957 * 1 2 3 22 22 H 0.96708 * 113.99980 * 304.19125 * 10 9 7 23 23 H 1.09000 * 113.76260 * 336.24966 * 11 9 7 24 24 H 1.09003 * 113.75356 * 107.60639 * 11 9 7 25 25 H 1.08999 * 109.47421 * 190.63970 * 13 12 11 26 26 H 1.09004 * 109.47241 * 310.64132 * 13 12 11 27 27 H 1.07998 * 122.76413 * 180.23777 * 16 15 14 28 28 H 1.09002 * 113.76401 * 220.98939 * 20 12 11 29 29 H 1.09003 * 113.76318 * 89.62656 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0828 9 6 3.5070 -1.1966 0.1174 10 8 3.9800 -0.4419 1.2346 11 6 4.2316 -0.8750 -1.2022 12 7 5.1700 -1.9587 -0.8360 13 6 5.4903 -2.7938 -2.0014 14 6 6.3556 -2.0127 -2.9566 15 7 7.6448 -1.9816 -2.9280 16 6 8.2489 -1.2480 -3.8414 17 6 7.4214 -0.6181 -4.6821 18 35 7.9331 0.5173 -6.1050 19 16 5.7699 -1.0338 -4.2301 20 6 4.1347 -2.5978 0.0058 21 1 -0.4850 -0.8368 -0.0738 22 1 3.6758 0.4761 1.2464 23 1 3.6393 -1.0888 -2.0919 24 1 4.6891 0.1141 -1.2221 25 1 6.0245 -3.6856 -1.6736 26 1 4.5680 -3.0866 -2.5031 27 1 9.3235 -1.1601 -3.9036 28 1 4.5148 -2.9853 0.9510 29 1 3.5141 -3.3156 -0.5306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530547745.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:45 Heat of formation + Delta-G solvation = 25.568762 kcal Electronic energy + Delta-G solvation = -16678.353587 eV Core-core repulsion = 13775.509753 eV Total energy + Delta-G solvation = -2902.843834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36629 -40.57609 -36.77672 -34.63443 -33.72141 -32.02733 -29.48552 -27.78175 -27.20014 -25.59371 -23.52752 -21.10508 -20.66356 -20.01927 -19.30360 -17.69029 -17.11662 -16.76873 -16.70271 -15.62526 -15.48913 -15.29901 -15.04216 -14.42584 -14.21015 -13.93948 -13.35583 -13.04855 -12.90047 -12.88136 -12.46627 -12.28443 -12.08139 -11.57313 -11.51970 -11.19110 -10.93831 -10.77893 -10.46823 -10.33036 -10.00583 -9.78405 -8.79202 -6.58283 -0.69026 -0.28361 0.39516 0.61581 1.36340 1.44833 1.55492 1.58765 2.36084 2.85167 2.85700 3.00557 3.57404 3.77459 3.93126 4.03396 4.07494 4.23742 4.32818 4.52947 4.70855 4.84140 4.86561 5.06895 5.20557 5.62443 5.89149 5.98814 6.39475 6.48643 6.81732 7.25389 8.53193 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.021618 B = 0.004225 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.910969 B = 6625.114626 C = 7364.911673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 1.060 2.940 4 H -0.257 1.257 5 H -0.235 1.235 6 H -0.284 1.284 7 C -0.614 4.614 8 H 0.037 0.963 9 C 0.187 3.813 10 O -0.560 6.560 11 C -0.027 4.027 12 N -0.469 5.469 13 C 0.087 3.913 14 C 0.065 3.935 15 N -0.478 5.478 16 C 0.081 3.919 17 C -0.264 4.264 18 Br 0.043 6.957 19 S 0.191 5.809 20 C 0.032 3.968 21 H 0.258 0.742 22 H 0.356 0.644 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.206 0.794 28 H 0.090 0.910 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.857 -0.136 -14.226 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.213 4.213 3 Si 0.882 3.118 4 H -0.182 1.182 5 H -0.159 1.159 6 H -0.210 1.210 7 C -0.652 4.652 8 H 0.055 0.945 9 C 0.146 3.854 10 O -0.370 6.370 11 C -0.156 4.156 12 N -0.193 5.193 13 C -0.044 4.044 14 C -0.212 4.212 15 N -0.194 5.194 16 C -0.075 4.075 17 C -0.465 4.465 18 Br 0.125 6.875 19 S 0.445 5.555 20 C -0.096 4.096 21 H 0.067 0.933 22 H 0.207 0.793 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.136 0.864 26 H 0.095 0.905 27 H 0.222 0.778 28 H 0.108 0.892 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 17.032 1.400 -14.240 22.245 hybrid contribution -0.617 -1.796 -0.259 1.916 sum 16.416 -0.396 -14.499 21.905 Atomic orbital electron populations 1.70907 1.07971 1.30319 1.47174 1.27138 0.96374 1.06177 0.91592 0.83982 0.76162 0.72338 0.79326 1.18239 1.15900 1.20995 1.22557 0.92433 0.94639 1.55528 0.94459 1.20510 0.90988 0.90760 0.83163 1.86430 1.75947 1.26033 1.48557 1.25036 0.93744 0.96725 1.00114 1.68691 1.30849 1.07218 1.12538 1.21407 0.97100 0.95971 0.89935 1.27098 0.93590 1.00866 0.99664 1.66449 1.08084 1.21215 1.23612 1.22272 1.02769 0.93028 0.89385 1.27948 0.98892 1.12394 1.07288 1.96723 1.90576 1.60822 1.39380 1.84291 1.05293 1.40829 1.25099 1.23975 0.91337 0.95954 0.98331 0.93280 0.79302 0.90665 0.90256 0.86355 0.90466 0.77752 0.89204 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.70 21.45 0.29 -54.87 15 2 C -0.01 -0.69 5.47 84.66 0.46 -0.23 15 3 Si 1.06 45.45 24.79 68.60 1.70 47.15 15 4 H -0.26 -10.19 6.95 99.48 0.69 -9.50 15 5 H -0.23 -8.88 4.85 99.48 0.48 -8.39 15 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 7 C -0.61 -32.68 9.04 25.60 0.23 -32.45 15 8 H 0.04 2.15 8.04 -2.91 -0.02 2.13 15 9 C 0.19 8.45 1.06 -10.89 -0.01 8.43 15 10 O -0.56 -26.04 13.42 -148.98 -2.00 -28.04 15 11 C -0.03 -1.05 5.31 86.41 0.46 -0.59 15 12 N -0.47 -16.86 6.25 -915.57 -5.72 -22.58 15 13 C 0.09 2.51 5.40 85.56 0.46 2.98 15 14 C 0.07 1.87 6.48 88.53 0.57 2.44 15 15 N -0.48 -13.71 10.54 -191.38 -2.02 -15.73 15 16 C 0.08 1.91 11.30 83.67 0.95 2.85 15 17 C -0.26 -6.09 7.08 66.80 0.47 -5.62 15 18 Br 0.04 0.79 34.09 -20.37 -0.69 0.10 15 19 S 0.19 4.86 22.81 -56.49 -1.29 3.57 15 20 C 0.03 1.24 7.36 86.41 0.64 1.88 15 21 H 0.26 15.48 8.72 -92.71 -0.81 14.67 15 22 H 0.36 15.39 4.23 -74.05 -0.31 15.08 15 23 H 0.08 2.87 7.73 -2.39 -0.02 2.85 15 24 H 0.08 3.12 6.52 -2.39 -0.02 3.10 15 25 H 0.12 3.08 8.14 -2.39 -0.02 3.06 15 26 H 0.08 2.04 7.69 -2.38 -0.02 2.02 15 27 H 0.21 3.60 8.06 -2.91 -0.02 3.57 15 28 H 0.09 3.35 8.14 -2.39 -0.02 3.33 15 29 H 0.09 3.05 7.74 -2.39 -0.02 3.03 15 Total: -1.00 -62.42 278.02 -4.90 -67.32 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.60 Total: 23.42 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 4.23 Total: -20.31 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -7.45 Total: -93.19 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -2.00 Total: -28.04 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.70 Total: 47.15 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.29 Total: 3.57 kcal Atomic # 35 Polarization: 0.79 SS G_CDS: -0.69 Total: 0.10 kcal Total: -62.42 -4.90 -67.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530547745.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.884 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds