Wall clock time and date at job start Tue Mar 31 2020 11:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38262 * 119.99907 * 2 1 4 4 C 1.38212 * 120.00113 * 179.78920 * 3 2 1 5 5 C 1.38248 * 119.99795 * 0.43611 * 4 3 2 6 6 C 1.38209 * 120.00407 * 359.81351 * 5 4 3 7 7 C 1.38207 * 120.00467 * 180.26585 * 2 1 3 8 8 C 1.50703 * 119.99991 * 359.97438 * 7 2 1 9 9 H 1.09006 * 109.46804 * 25.10851 * 8 7 2 10 10 C 1.52998 * 109.47265 * 265.10859 * 8 7 2 11 11 C 1.53001 * 109.46681 * 304.30582 * 10 8 7 12 12 C 1.52995 * 109.47138 * 64.30315 * 10 8 7 13 13 N 1.46906 * 109.47284 * 145.10341 * 8 7 2 14 14 C 1.46895 * 110.99849 * 307.92468 * 13 8 7 15 15 C 1.46898 * 110.99750 * 183.96721 * 13 8 7 16 16 C 1.53003 * 109.46902 * 208.95189 * 15 13 8 17 17 C 1.53008 * 109.47133 * 298.22322 * 16 15 13 18 18 C 1.53001 * 109.47011 * 58.21986 * 16 15 13 19 19 C 1.53000 * 109.47040 * 178.22245 * 16 15 13 20 20 C 1.50708 * 109.46888 * 180.02562 * 19 16 15 21 21 H 1.07999 * 119.99883 * 359.97438 * 20 19 16 22 22 C 1.37872 * 119.99687 * 180.02562 * 20 19 16 23 23 N 1.31518 * 119.99702 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00154 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46744 * 90.00205 * 24 22 20 26 26 H 1.48505 * 109.46915 * 210.00149 * 24 22 20 27 27 H 1.48495 * 109.46867 * 330.00093 * 24 22 20 28 28 H 1.09007 * 109.47364 * 266.93506 * 1 2 3 29 29 H 1.09003 * 109.46589 * 146.94046 * 1 2 3 30 30 H 1.08994 * 109.47534 * 26.93948 * 1 2 3 31 31 H 1.08007 * 119.99690 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.00090 * 180.27429 * 4 3 2 33 33 H 1.08001 * 120.00000 * 179.83770 * 5 4 3 34 34 H 1.08005 * 120.00543 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.46996 * 184.31114 * 10 8 7 36 36 H 1.09000 * 109.47460 * 66.76417 * 11 10 8 37 37 H 1.09005 * 109.46646 * 186.75955 * 11 10 8 38 38 H 1.09004 * 109.47415 * 306.75467 * 11 10 8 39 39 H 1.09000 * 109.47070 * 61.13151 * 12 10 8 40 40 H 1.09000 * 109.47137 * 181.12548 * 12 10 8 41 41 H 1.08999 * 109.47701 * 301.13028 * 12 10 8 42 42 H 1.08995 * 109.47774 * 68.40376 * 14 13 8 43 43 H 1.08999 * 109.47063 * 188.40368 * 14 13 8 44 44 H 1.08998 * 109.47265 * 308.40163 * 14 13 8 45 45 H 1.08993 * 109.47220 * 328.95360 * 15 13 8 46 46 H 1.08998 * 109.46884 * 88.95435 * 15 13 8 47 47 H 1.08994 * 109.47065 * 71.85625 * 17 16 15 48 48 H 1.09001 * 109.46910 * 191.85442 * 17 16 15 49 49 H 1.09007 * 109.46605 * 311.85214 * 17 16 15 50 50 H 1.09000 * 109.46961 * 59.99856 * 18 16 15 51 51 H 1.09003 * 109.46742 * 180.02562 * 18 16 15 52 52 H 1.08996 * 109.47367 * 299.99830 * 18 16 15 53 53 H 1.08996 * 109.46975 * 299.99632 * 19 16 15 54 54 H 1.08989 * 109.47177 * 60.00169 * 19 16 15 55 55 H 0.96998 * 119.99958 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0044 5 6 4.2717 0.0002 -0.0003 6 6 3.5807 -1.1968 -0.0055 7 6 2.1981 -1.1968 -0.0056 8 6 1.4447 -2.5020 -0.0110 9 1 0.4569 -2.3495 -0.4461 10 6 1.2968 -3.0116 1.4240 11 6 2.6790 -3.1234 2.0704 12 6 0.4362 -2.0336 2.2263 13 7 2.1834 -3.4905 -0.8081 14 6 2.5086 -2.9577 -2.1378 15 6 1.4323 -4.7485 -0.9141 16 6 2.4103 -5.9148 -1.0701 17 6 3.2170 -5.7353 -2.3578 18 6 3.3619 -5.9460 0.1276 19 6 1.6301 -7.2293 -1.1361 20 6 2.5935 -8.3781 -1.2891 21 1 3.6559 -8.1894 -1.3351 22 6 2.1185 -9.6697 -1.3713 23 7 2.9592 -10.6722 -1.5053 24 14 0.2809 -9.9960 -1.2925 25 1 -0.2868 -9.9640 -2.6643 26 1 0.0406 -11.3311 -0.6882 27 1 -0.3719 -8.9522 -0.4621 28 1 -0.3634 -0.0549 1.0262 29 1 -0.3632 -0.8613 -0.5606 30 1 -0.3634 0.9161 -0.4655 31 1 1.6582 2.1327 -0.0004 32 1 4.1203 2.1327 0.0089 33 1 5.3517 0.0002 0.0005 34 1 4.1207 -2.1321 -0.0096 35 1 0.8200 -3.9916 1.4142 36 1 3.1061 -2.1276 2.1896 37 1 2.5859 -3.5980 3.0473 38 1 3.3298 -3.7242 1.4351 39 1 -0.5550 -1.9691 1.7774 40 1 0.3474 -2.3863 3.2538 41 1 0.9029 -1.0486 2.2193 42 1 3.2422 -2.1577 -2.0393 43 1 2.9205 -3.7541 -2.7575 44 1 1.6042 -2.5660 -2.6034 45 1 0.8357 -4.8926 -0.0134 46 1 0.7749 -4.7070 -1.7826 47 1 3.9280 -4.9191 -2.2303 48 1 3.7566 -6.6559 -2.5798 49 1 2.5408 -5.5030 -3.1806 50 1 2.7873 -6.0738 1.0449 51 1 4.0589 -6.7766 0.0162 52 1 3.9177 -5.0096 0.1746 53 1 1.0556 -7.3572 -0.2187 54 1 0.9523 -7.2070 -1.9893 55 1 2.6250 -11.5810 -1.5629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538730148.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:25 Heat of formation + Delta-G solvation = 8.342731 kcal Electronic energy + Delta-G solvation = -29037.135683 eV Core-core repulsion = 25652.243920 eV Total energy + Delta-G solvation = -3384.891763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.44769 -39.39404 -37.30876 -35.22180 -34.11810 -33.60022 -31.68338 -29.67294 -29.00425 -28.31886 -27.70515 -27.39944 -26.75399 -24.75374 -23.33368 -22.62242 -22.09235 -19.89898 -19.39296 -18.83924 -17.40153 -17.02031 -16.56943 -16.26722 -16.12957 -15.71249 -15.34725 -15.10289 -14.88793 -14.75220 -14.47120 -14.21395 -14.04242 -13.81441 -13.76221 -13.64150 -13.48916 -13.22353 -13.13250 -13.09803 -12.89590 -12.67911 -12.47250 -12.32320 -12.27664 -12.19834 -11.98415 -11.89694 -11.77799 -11.71008 -11.58333 -11.51663 -11.25615 -11.03266 -10.82732 -10.68977 -10.66992 -9.48201 -9.36170 -9.05700 -8.19768 -6.19320 0.55062 0.61809 1.35853 1.37805 1.48724 2.40666 2.90335 3.06951 3.15425 3.72537 4.05386 4.08105 4.13243 4.15802 4.21151 4.25160 4.31594 4.41043 4.43745 4.46125 4.54351 4.63307 4.65848 4.76969 4.79347 4.81285 4.88632 4.90346 4.93441 4.95708 5.01390 5.03567 5.06392 5.12687 5.13997 5.15833 5.18130 5.24981 5.28812 5.34165 5.39213 5.43111 5.49180 5.52565 5.57924 5.63352 5.70245 5.71896 5.75509 5.81806 5.85228 5.90196 6.21897 6.28059 6.35671 6.46532 6.88078 7.42813 8.96546 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.003478 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.446390 B = 8048.572377 C = 8412.969437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.142 4.142 6 C -0.097 4.097 7 C -0.074 4.074 8 C 0.128 3.872 9 H 0.049 0.951 10 C -0.084 4.084 11 C -0.141 4.141 12 C -0.144 4.144 13 N -0.523 5.523 14 C 0.006 3.994 15 C 0.070 3.930 16 C -0.038 4.038 17 C -0.125 4.125 18 C -0.104 4.104 19 C -0.002 4.002 20 C -0.499 4.499 21 H 0.044 0.956 22 C 0.001 3.999 23 N -0.955 5.955 24 Si 0.939 3.061 25 H -0.272 1.272 26 H -0.289 1.289 27 H -0.249 1.249 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.017 0.983 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.068 0.932 48 H 0.032 0.968 49 H 0.045 0.955 50 H 0.036 0.964 51 H 0.023 0.977 52 H 0.069 0.931 53 H 0.012 0.988 54 H 0.008 0.992 55 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 27.049 4.730 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.116 4.116 7 C -0.074 4.074 8 C 0.020 3.980 9 H 0.067 0.933 10 C -0.103 4.103 11 C -0.198 4.198 12 C -0.201 4.201 13 N -0.246 5.246 14 C -0.142 4.142 15 C -0.058 4.058 16 C -0.039 4.039 17 C -0.182 4.182 18 C -0.161 4.161 19 C -0.040 4.040 20 C -0.537 4.537 21 H 0.062 0.938 22 C -0.195 4.195 23 N -0.598 5.598 24 Si 0.764 3.236 25 H -0.197 1.197 26 H -0.216 1.216 27 H -0.173 1.173 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.036 0.964 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.064 0.936 50 H 0.055 0.945 51 H 0.042 0.958 52 H 0.088 0.912 53 H 0.030 0.970 54 H 0.026 0.974 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.083 26.781 4.953 27.539 hybrid contribution -1.146 -0.949 -0.585 1.599 sum -5.229 25.831 4.368 26.715 Atomic orbital electron populations 1.21045 0.90707 1.02820 1.03135 1.19907 0.96636 0.92539 0.99970 1.21199 0.94510 0.97668 1.01571 1.21352 0.94509 0.98499 0.99908 1.21354 1.00534 0.92597 1.01521 1.21136 0.93870 0.98375 0.98187 1.19490 0.93815 0.93300 1.00807 1.20681 0.94258 0.88854 0.94183 0.93342 1.21124 0.97180 0.98875 0.93106 1.21870 0.96756 1.01468 0.99667 1.21965 0.99287 0.99173 0.99684 1.61829 1.44759 1.03064 1.14976 1.22914 1.00052 1.01221 0.90014 1.22162 0.94310 0.89042 1.00247 1.20239 0.95263 0.92598 0.95765 1.21919 0.99468 1.00378 0.96403 1.21537 0.98311 1.00002 0.96227 1.19587 0.95303 0.93614 0.95518 1.21424 0.94221 0.90885 1.47178 0.93754 1.25904 1.02095 0.96312 0.95166 1.70068 1.36505 0.99661 1.53533 0.85825 0.81148 0.77620 0.79027 1.19729 1.21552 1.17253 0.89940 0.91994 0.90781 0.84702 0.84621 0.85312 0.85938 0.91749 0.92943 0.93758 0.91606 0.92064 0.92453 0.92146 0.90943 0.89800 0.96409 0.91053 0.95035 0.91333 0.94939 0.93625 0.94461 0.95818 0.91240 0.96976 0.97364 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.50 71.24 0.61 -1.18 16 2 C -0.09 -1.65 4.92 -19.87 -0.10 -1.74 16 3 C -0.13 -2.17 9.69 22.27 0.22 -1.96 16 4 C -0.12 -2.06 10.05 22.27 0.22 -1.83 16 5 C -0.14 -2.64 10.05 22.27 0.22 -2.42 16 6 C -0.10 -2.07 5.42 22.27 0.12 -1.95 16 7 C -0.07 -1.53 2.96 -19.87 -0.06 -1.59 16 8 C 0.13 2.84 1.23 44.17 0.05 2.90 16 9 H 0.05 1.09 5.81 -2.38 -0.01 1.08 16 10 C -0.08 -1.86 2.60 -10.80 -0.03 -1.88 16 11 C -0.14 -3.26 7.94 71.98 0.57 -2.69 16 12 C -0.14 -2.58 7.50 71.98 0.54 -2.04 16 13 N -0.52 -13.29 2.19 -901.48 -1.97 -15.26 16 14 C 0.01 0.14 8.16 127.69 1.04 1.18 16 15 C 0.07 2.13 4.02 86.30 0.35 2.47 16 16 C -0.04 -1.42 0.60 -52.18 -0.03 -1.45 16 17 C -0.12 -4.56 6.74 71.98 0.49 -4.08 16 18 C -0.10 -3.86 7.40 71.98 0.53 -3.33 16 19 C 0.00 -0.11 3.11 29.85 0.09 -0.02 16 20 C -0.50 -28.09 8.04 25.60 0.21 -27.89 16 21 H 0.04 2.74 6.00 -2.91 -0.02 2.73 16 22 C 0.00 0.04 5.47 84.65 0.46 0.50 16 23 N -0.96 -60.45 13.96 21.45 0.30 -60.15 16 24 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 28 H 0.08 1.09 5.91 -2.38 -0.01 1.08 16 29 H 0.06 1.00 6.02 -2.39 -0.01 0.98 16 30 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 31 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.12 2.88 6.90 -2.91 -0.02 2.86 16 35 H 0.06 1.60 6.01 -2.39 -0.01 1.58 16 36 H 0.05 1.18 6.43 -2.39 -0.02 1.16 16 37 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.71 4.94 -2.38 -0.01 1.70 16 39 H 0.06 0.98 7.33 -2.39 -0.02 0.96 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 1.08 5.73 -2.39 -0.01 1.06 16 42 H 0.07 1.69 5.76 -2.39 -0.01 1.67 16 43 H 0.08 2.18 3.84 -2.39 -0.01 2.17 16 44 H 0.02 0.42 8.10 -2.39 -0.02 0.40 16 45 H 0.07 2.14 5.63 -2.39 -0.01 2.13 16 46 H 0.03 0.96 7.86 -2.39 -0.02 0.94 16 47 H 0.07 2.19 6.35 -2.39 -0.02 2.17 16 48 H 0.03 1.41 6.32 -2.39 -0.02 1.39 16 49 H 0.04 1.55 7.42 -2.38 -0.02 1.53 16 50 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.02 1.01 6.62 -2.39 -0.02 1.00 16 52 H 0.07 2.28 5.98 -2.39 -0.01 2.26 16 53 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 54 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 55 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -63.52 383.46 6.53 -57.00 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.81 Total: 20.57 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 5.51 Total: -48.99 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -1.67 Total: -75.41 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -63.52 6.53 -57.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538730148.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.339 kcal (2) G-P(sol) polarization free energy of solvation -63.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds