Wall clock time and date at job start Tue Mar 31 2020 12:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47049 * 2 1 4 4 H 1.08999 * 109.46965 * 306.83583 * 3 2 1 5 5 C 1.50706 * 109.46954 * 186.83765 * 3 2 1 6 6 H 1.07995 * 119.99569 * 239.99740 * 5 3 2 7 7 C 1.37884 * 119.99874 * 59.99901 * 5 3 2 8 8 N 1.31515 * 119.99894 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99518 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47450 * 60.00082 * 9 7 5 11 11 H 1.48502 * 109.47067 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47012 * 299.99909 * 9 7 5 13 13 N 1.46888 * 109.47165 * 66.83594 * 3 2 1 14 14 C 1.39824 * 111.00264 * 264.35248 * 13 3 2 15 15 C 1.39015 * 120.06335 * 295.71768 * 14 13 3 16 16 Cl 1.73605 * 120.04122 * 359.95689 * 15 14 13 17 17 C 1.38167 * 119.91744 * 179.97438 * 15 14 13 18 18 C 1.38412 * 120.04995 * 0.02959 * 17 15 14 19 19 Cl 1.73600 * 119.93559 * 179.97438 * 18 17 15 20 20 C 1.38341 * 120.12776 * 359.97438 * 18 17 15 21 21 C 1.38167 * 120.08597 * 359.73862 * 20 18 17 22 22 N 1.48010 * 120.02911 * 180.27343 * 21 20 18 23 23 O 1.21797 * 119.99880 * 5.85404 * 22 21 20 24 24 O 1.21803 * 120.00289 * 185.83957 * 22 21 20 25 25 H 1.09000 * 109.47494 * 299.22607 * 1 2 3 26 26 H 1.09000 * 109.47086 * 59.22302 * 1 2 3 27 27 H 1.08998 * 109.46752 * 179.22204 * 1 2 3 28 28 H 1.08998 * 109.47613 * 239.99794 * 2 1 3 29 29 H 1.08997 * 109.47548 * 119.99744 * 2 1 3 30 30 H 0.96998 * 119.98965 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00098 * 140.39758 * 13 3 2 32 32 H 1.08004 * 119.97771 * 179.97438 * 17 15 14 33 33 H 1.08001 * 119.95842 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5802 1.9905 -0.8225 5 6 3.5375 1.4459 -0.1692 6 1 4.1660 1.8823 0.5930 7 6 4.1051 0.8919 -1.2970 8 7 3.3396 0.3610 -2.2253 9 14 5.9613 0.8967 -1.5069 10 1 6.5882 0.1507 -0.3864 11 1 6.3155 0.2469 -2.7944 12 1 6.4557 2.2971 -1.5073 13 7 1.6896 2.0858 1.2732 14 6 0.5003 2.8119 1.1573 15 6 0.4357 3.9118 0.3095 16 17 1.8321 4.3865 -0.6061 17 6 -0.7412 4.6268 0.1968 18 6 -1.8544 4.2490 0.9275 19 17 -3.3314 5.1499 0.7842 20 6 -1.7923 3.1548 1.7718 21 6 -0.6199 2.4324 1.8842 22 7 -0.5567 1.2584 2.7833 23 8 -1.5645 0.8644 3.3422 24 8 0.5032 0.6860 2.9640 25 1 -0.3634 0.5018 0.8968 26 1 -0.3633 0.5259 -0.8829 27 1 -0.3633 -1.0276 -0.0140 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.7391 -0.0291 -3.0185 31 1 2.4416 2.6736 1.6005 32 1 -0.7924 5.4817 -0.4612 33 1 -2.6624 2.8627 2.3410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553494995.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:05 Heat of formation + Delta-G solvation = 28.130960 kcal Electronic energy + Delta-G solvation = -23057.726738 eV Core-core repulsion = 19367.377988 eV Total energy + Delta-G solvation = -3690.348750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.032 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87875 -39.81661 -37.32934 -36.38777 -36.27721 -35.74002 -32.97517 -31.87524 -31.25495 -29.26529 -26.65712 -25.88693 -23.29066 -22.61400 -21.99739 -19.78974 -19.07467 -18.22498 -17.50059 -17.10655 -16.42528 -16.18115 -15.60057 -15.04508 -14.74152 -14.19718 -13.87244 -13.28471 -12.85169 -12.69519 -12.42039 -12.21202 -12.06982 -11.53026 -11.37261 -11.21691 -11.08412 -10.95899 -10.92476 -10.76377 -10.71142 -10.54351 -10.27888 -10.10434 -9.73953 -9.38415 -9.02566 -8.74471 -8.59358 -7.87653 -6.14565 -4.22183 -0.02927 0.57458 1.32885 1.51807 1.92181 2.13869 2.98118 3.24057 3.29826 3.32450 4.10822 4.33567 4.43790 4.54072 4.70353 4.86877 5.17067 5.28776 5.48891 5.62457 5.80306 6.11753 6.17717 6.40774 6.72724 6.79458 6.91248 7.18307 7.29234 7.61748 7.65896 7.93223 8.11230 8.15053 8.32307 8.81025 9.42940 10.90741 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.005456 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.357689 B = 5131.138133 C = 6218.099597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.223 3.777 4 H 0.025 0.975 5 C -0.519 4.519 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.639 5.639 14 C 0.209 3.791 15 C -0.077 4.077 16 Cl -0.001 7.001 17 C -0.053 4.053 18 C -0.047 4.047 19 Cl -0.044 7.044 20 C -0.049 4.049 21 C -0.017 4.017 22 N 0.034 4.966 23 O -0.212 6.212 24 O -0.066 6.066 25 H 0.023 0.977 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.362 0.638 32 H 0.155 0.845 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 9.521 4.044 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C 0.119 3.881 4 H 0.043 0.957 5 C -0.557 4.557 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.276 5.276 14 C 0.108 3.892 15 C -0.107 4.107 16 Cl 0.028 6.972 17 C -0.073 4.073 18 C -0.075 4.075 19 Cl -0.015 7.015 20 C -0.069 4.069 21 C -0.102 4.102 22 N 0.557 4.443 23 O -0.411 6.411 24 O -0.303 6.303 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.189 0.811 32 H 0.172 0.828 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.711 9.559 3.603 14.095 hybrid contribution 1.120 0.553 -0.642 1.404 sum -8.591 10.112 2.961 13.595 Atomic orbital electron populations 1.21982 1.00419 0.99450 0.98489 1.21613 0.90732 0.99281 1.03020 1.19476 0.95902 0.91120 0.81566 0.95732 1.21103 0.90294 1.39438 1.04872 0.91977 1.24832 0.98119 0.94850 0.95586 1.69863 1.34891 1.38293 1.09176 0.86602 0.85345 0.78245 0.77514 1.19959 1.21284 1.20396 1.58801 1.01784 1.31701 1.35274 1.18789 0.93830 0.88219 0.88330 1.21829 0.91712 0.98012 0.99195 1.98476 1.37310 1.90548 1.70846 1.21228 0.89609 0.99330 0.97112 1.20244 0.89409 0.96430 1.01428 1.98393 1.32500 1.73407 1.97166 1.20749 0.97340 0.92201 0.96598 1.20762 0.95839 0.92762 1.00809 1.43126 1.00735 1.00936 0.99505 1.94498 1.26357 1.69633 1.50592 1.94685 1.17416 1.54544 1.63671 0.95824 0.94650 0.94456 0.88507 0.92991 0.92647 0.81075 0.82780 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.29 37.16 0.35 -2.72 16 2 C -0.11 -2.52 5.41 -26.73 -0.14 -2.66 16 3 C 0.22 5.02 1.23 -68.86 -0.08 4.94 16 4 H 0.03 0.60 5.80 -51.93 -0.30 0.30 16 5 C -0.52 -12.71 8.56 -34.44 -0.29 -13.00 16 6 H 0.06 1.50 7.47 -52.49 -0.39 1.11 16 7 C 0.07 1.75 5.28 -17.82 -0.09 1.66 16 8 N -0.88 -23.48 11.29 55.43 0.63 -22.85 16 9 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.64 -12.46 3.83 -52.98 -0.20 -12.67 16 14 C 0.21 3.59 4.55 -83.71 -0.38 3.20 16 15 C -0.08 -1.17 5.87 -39.32 -0.23 -1.40 16 16 Cl 0.00 -0.02 26.08 -51.86 -1.35 -1.37 16 17 C -0.05 -0.65 9.60 -39.54 -0.38 -1.03 16 18 C -0.05 -0.56 6.32 -39.48 -0.25 -0.81 16 19 Cl -0.04 -0.44 28.95 -51.86 -1.50 -1.94 16 20 C -0.05 -0.65 9.33 -39.57 -0.37 -1.02 16 21 C -0.02 -0.28 5.36 -79.76 -0.43 -0.70 16 22 N 0.03 0.63 3.16 34.05 0.11 0.74 16 23 O -0.21 -3.84 18.46 -29.46 -0.54 -4.38 16 24 O -0.07 -1.33 16.17 -29.46 -0.48 -1.81 16 25 H 0.02 0.46 2.59 -51.93 -0.13 0.33 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.51 5.92 -51.93 -0.31 2.20 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.36 6.79 7.85 -39.29 -0.31 6.48 16 32 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 33 H 0.16 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -26.16 307.66 -8.71 -34.87 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -2.67 Total: 3.29 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.31 Total: -13.55 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.53 Total: -34.79 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -1.02 Total: -6.19 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -2.85 Total: -3.31 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.16 -8.71 -34.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553494995.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.001 kcal (2) G-P(sol) polarization free energy of solvation -26.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds