Wall clock time and date at job start Tue Mar 31 2020 11:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47263 * 2 1 4 4 C 1.53002 * 109.47269 * 239.99849 * 2 1 3 5 5 C 1.52999 * 109.47521 * 173.24958 * 4 2 1 6 6 C 1.53008 * 109.46961 * 305.58558 * 5 4 2 7 7 C 1.53006 * 109.46804 * 65.58267 * 5 4 2 8 8 C 1.50692 * 109.47352 * 185.58389 * 5 4 2 9 9 C 1.38228 * 120.00296 * 359.72837 * 8 5 4 10 10 C 1.38240 * 120.00263 * 179.76623 * 9 8 5 11 11 C 1.38232 * 119.99827 * 0.50670 * 10 9 8 12 12 C 1.38237 * 119.99759 * 359.74812 * 11 10 9 13 13 C 1.38226 * 120.00201 * 359.97438 * 12 11 10 14 14 N 1.46897 * 109.47360 * 119.99901 * 2 1 3 15 15 C 1.46894 * 111.00136 * 275.00093 * 14 2 1 16 16 C 1.53002 * 109.47452 * 179.97438 * 15 14 2 17 17 C 1.52998 * 109.46993 * 300.00022 * 16 15 14 18 18 C 1.53000 * 109.47165 * 59.99794 * 16 15 14 19 19 C 1.53001 * 109.47449 * 180.02562 * 16 15 14 20 20 C 1.50700 * 109.47031 * 180.02562 * 19 16 15 21 21 H 1.07990 * 120.00502 * 359.97438 * 20 19 16 22 22 C 1.37878 * 119.99460 * 180.02562 * 20 19 16 23 23 N 1.31509 * 120.00225 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99624 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47214 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47177 * 119.99869 * 24 22 20 27 27 H 1.48498 * 109.47064 * 239.99694 * 24 22 20 28 28 H 1.09004 * 109.46551 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46966 * 60.00279 * 1 2 3 30 30 H 1.09000 * 109.47266 * 299.99947 * 1 2 3 31 31 H 1.08993 * 109.47107 * 293.25364 * 4 2 1 32 32 H 1.09006 * 109.46902 * 53.24883 * 4 2 1 33 33 H 1.09002 * 109.47004 * 59.99593 * 6 5 4 34 34 H 1.08998 * 109.47064 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.46978 * 299.99427 * 6 5 4 36 36 H 1.08990 * 109.46794 * 51.65617 * 7 5 4 37 37 H 1.09003 * 109.47034 * 171.65699 * 7 5 4 38 38 H 1.09002 * 109.47072 * 291.65608 * 7 5 4 39 39 H 1.08005 * 119.99724 * 359.97438 * 9 8 5 40 40 H 1.08004 * 119.99791 * 180.22583 * 10 9 8 41 41 H 1.07994 * 119.99737 * 179.72452 * 11 10 9 42 42 H 1.08005 * 119.99472 * 179.97438 * 12 11 10 43 43 H 1.08006 * 120.00292 * 179.97438 * 13 12 11 44 44 H 1.00901 * 111.00015 * 38.95478 * 14 2 1 45 45 H 1.09004 * 109.47576 * 300.00041 * 15 14 2 46 46 H 1.09005 * 109.47549 * 60.00154 * 15 14 2 47 47 H 1.09005 * 109.47427 * 59.99557 * 17 16 15 48 48 H 1.09006 * 109.47495 * 179.97438 * 17 16 15 49 49 H 1.09001 * 109.47660 * 300.00010 * 17 16 15 50 50 H 1.09006 * 109.46877 * 59.99920 * 18 16 15 51 51 H 1.09003 * 109.47237 * 180.02562 * 18 16 15 52 52 H 1.09000 * 109.46964 * 300.00597 * 18 16 15 53 53 H 1.09006 * 109.46682 * 300.00134 * 19 16 15 54 54 H 1.09000 * 109.47123 * 59.99769 * 19 16 15 55 55 H 0.97006 * 120.00079 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5606 -0.5761 -1.3370 6 6 3.9357 0.9061 -1.2786 7 6 4.2117 -1.3135 -0.1650 8 6 4.0476 -1.1668 -2.6350 9 6 3.1465 -1.7291 -3.5196 10 6 3.5927 -2.2666 -4.7125 11 6 4.9412 -2.2511 -5.0160 12 6 5.8429 -1.6935 -4.1289 13 6 5.3961 -1.1509 -2.9387 14 7 2.0197 -0.6924 1.1994 15 6 2.0825 0.2226 2.3468 16 6 2.5952 -0.5331 3.5744 17 6 1.6453 -1.6888 3.8952 18 6 3.9922 -1.0863 3.2862 19 6 2.6600 0.4198 4.7697 20 6 3.1655 -0.3245 5.9787 21 1 3.4151 -1.3723 5.9023 22 6 3.3082 0.3323 7.1825 23 7 3.0037 1.6083 7.2757 24 14 3.9355 -0.5901 8.6810 25 1 4.2052 -2.0038 8.3150 26 1 5.1883 0.0443 9.1641 27 1 2.9113 -0.5441 9.7552 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 1.7787 -1.7778 -1.1909 32 1 1.5814 -0.2819 -2.1351 33 1 3.5834 1.3333 -0.3397 34 1 5.0189 1.0095 -1.3406 35 1 3.4719 1.4313 -2.1134 36 1 3.8287 -2.3329 -0.1193 37 1 5.2923 -1.3373 -0.3060 38 1 3.9780 -0.7955 0.7651 39 1 2.0934 -1.7455 -3.2803 40 1 2.8881 -2.7026 -5.4053 41 1 5.2902 -2.6750 -5.9460 42 1 6.8966 -1.6818 -4.3659 43 1 6.1007 -0.7156 -2.2455 44 1 1.4496 -1.4979 1.4100 45 1 2.7589 1.0463 2.1182 46 1 1.0871 0.6163 2.5526 47 1 1.5986 -2.3679 3.0438 48 1 2.0107 -2.2276 4.7696 49 1 0.6499 -1.2949 4.1006 50 1 4.6690 -0.2628 3.0576 51 1 4.3573 -1.6250 4.1606 52 1 3.9456 -1.7652 2.4348 53 1 3.3365 1.2435 4.5414 54 1 1.6645 0.8135 4.9749 55 1 3.1045 2.0704 8.1226 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554071995.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:56 Heat of formation + Delta-G solvation = -14.264440 kcal Electronic energy + Delta-G solvation = -27933.238179 eV Core-core repulsion = 24547.366096 eV Total energy + Delta-G solvation = -3385.872084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.92780 -39.46300 -37.79521 -35.56798 -34.32963 -31.92071 -31.14847 -30.47016 -28.78029 -28.16895 -27.77412 -27.39935 -26.49792 -24.44847 -23.74781 -23.07438 -21.61965 -19.83647 -19.33466 -18.30542 -17.78911 -16.69824 -16.48089 -16.12890 -15.85725 -15.67023 -15.51075 -14.98295 -14.76522 -14.56187 -14.50303 -14.32352 -14.17007 -13.90030 -13.77050 -13.46316 -13.38061 -13.19034 -12.97962 -12.85979 -12.71272 -12.47715 -12.43035 -12.39289 -12.27761 -12.16868 -12.05220 -12.01763 -11.79272 -11.67558 -11.52161 -11.33854 -11.12855 -11.05462 -10.79474 -10.63346 -10.49631 -9.71520 -9.46297 -8.92890 -8.12942 -6.19226 0.58578 0.60100 1.39620 1.41019 1.52804 2.44172 2.99788 3.21199 3.38531 3.73355 3.91127 4.16333 4.23441 4.24979 4.25438 4.32772 4.34716 4.40292 4.46685 4.49045 4.52377 4.62154 4.74504 4.79086 4.79567 4.87457 4.88156 4.99955 5.00683 5.02007 5.09656 5.13568 5.20107 5.20902 5.24781 5.26779 5.30379 5.32414 5.33349 5.37345 5.46868 5.55238 5.56456 5.58503 5.63783 5.70929 5.72243 5.74488 5.89900 5.92483 5.96234 6.04381 6.24349 6.24733 6.41600 6.68838 6.96756 7.48001 8.99495 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.021230 B = 0.002738 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.591654 B =10223.988557 C =10843.040626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 H 0.074 0.926 4 C -0.087 4.087 5 C -0.010 4.010 6 C -0.137 4.137 7 C -0.137 4.137 8 C -0.073 4.073 9 C -0.134 4.134 10 C -0.127 4.127 11 C -0.139 4.139 12 C -0.129 4.129 13 C -0.132 4.132 14 N -0.663 5.663 15 C 0.084 3.916 16 C -0.051 4.051 17 C -0.121 4.121 18 C -0.109 4.109 19 C 0.039 3.961 20 C -0.510 4.510 21 H 0.065 0.935 22 C -0.005 4.005 23 N -0.938 5.938 24 Si 0.953 3.047 25 H -0.261 1.261 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.341 0.659 45 H 0.054 0.946 46 H 0.014 0.986 47 H 0.068 0.932 48 H 0.043 0.957 49 H 0.034 0.966 50 H 0.029 0.971 51 H 0.033 0.967 52 H 0.075 0.925 53 H -0.017 1.017 54 H -0.018 1.018 55 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -7.245 -25.275 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.092 0.908 4 C -0.125 4.125 5 C -0.010 4.010 6 C -0.194 4.194 7 C -0.194 4.194 8 C -0.073 4.073 9 C -0.152 4.152 10 C -0.145 4.145 11 C -0.157 4.157 12 C -0.147 4.147 13 C -0.150 4.150 14 N -0.295 5.295 15 C -0.045 4.045 16 C -0.052 4.052 17 C -0.179 4.179 18 C -0.166 4.166 19 C 0.002 3.998 20 C -0.548 4.548 21 H 0.083 0.917 22 C -0.202 4.202 23 N -0.580 5.580 24 Si 0.779 3.221 25 H -0.185 1.185 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.118 0.882 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.135 0.865 44 H 0.161 0.839 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.049 0.951 51 H 0.052 0.948 52 H 0.094 0.906 53 H 0.001 0.999 54 H 0.000 1.000 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.168 -7.041 -25.325 26.287 hybrid contribution -0.541 0.332 1.573 1.696 sum -0.709 -6.709 -23.753 24.692 Atomic orbital electron populations 1.22441 0.96871 1.02380 1.01923 1.21725 0.92644 0.98225 0.90595 0.90836 1.21657 0.93836 1.00789 0.96244 1.19312 0.95468 0.94710 0.91468 1.21914 1.00966 0.95019 1.01464 1.22200 0.97270 1.00177 0.99758 1.20127 0.93570 0.97631 0.95944 1.21409 1.00403 0.99062 0.94321 1.21441 0.96288 0.99550 0.97193 1.21399 0.93617 1.00392 1.00265 1.21377 1.00496 0.98543 0.94316 1.21159 0.95650 1.00715 0.97517 1.60919 1.56318 1.09338 1.02947 1.21787 0.97766 0.94793 0.90162 1.20447 0.96013 0.95479 0.93231 1.21678 0.97732 0.97612 1.00847 1.21606 0.94990 0.99765 1.00283 1.19016 0.93953 0.93836 0.93008 1.21656 1.41612 0.96671 0.94844 0.91692 1.25903 0.96404 0.95649 1.02217 1.70114 1.50944 1.10680 1.26242 0.85565 0.77779 0.79271 0.79464 1.18493 1.20926 1.20895 0.91833 0.91187 0.94045 0.91370 0.90739 0.92501 0.93205 0.92719 0.93887 0.95497 0.88177 0.84688 0.84463 0.84552 0.84988 0.86463 0.83862 0.92756 0.96772 0.91275 0.93838 0.94689 0.95144 0.94825 0.90584 0.99867 0.99989 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 9.16 71.98 0.66 -2.61 16 2 C 0.08 1.58 2.25 44.92 0.10 1.68 16 3 H 0.07 1.65 5.61 -2.39 -0.01 1.64 16 4 C -0.09 -1.56 2.76 30.59 0.08 -1.47 16 5 C -0.01 -0.19 0.63 -52.93 -0.03 -0.23 16 6 C -0.14 -2.86 7.78 71.98 0.56 -2.30 16 7 C -0.14 -3.23 7.04 71.98 0.51 -2.73 16 8 C -0.07 -1.47 4.76 -19.87 -0.09 -1.57 16 9 C -0.13 -2.42 8.98 22.27 0.20 -2.22 16 10 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 11 C -0.14 -2.24 10.05 22.27 0.22 -2.01 16 12 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 13 C -0.13 -2.70 8.61 22.27 0.19 -2.51 16 14 N -0.66 -15.94 2.37 -491.57 -1.16 -17.10 16 15 C 0.08 2.69 4.27 86.31 0.37 3.06 16 16 C -0.05 -1.96 0.60 -52.18 -0.03 -1.99 16 17 C -0.12 -4.25 7.89 71.98 0.57 -3.69 16 18 C -0.11 -4.00 7.28 71.98 0.52 -3.47 16 19 C 0.04 2.03 4.04 29.85 0.12 2.15 16 20 C -0.51 -28.14 7.65 25.60 0.20 -27.94 16 21 H 0.07 3.46 5.68 -2.92 -0.02 3.44 16 22 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 23 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 24 Si 0.95 44.69 29.54 68.60 2.03 46.72 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 28 H 0.06 1.07 8.13 -2.38 -0.02 1.05 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 0.89 7.45 -2.39 -0.02 0.88 16 31 H 0.07 1.20 7.81 -2.39 -0.02 1.18 16 32 H 0.07 1.16 7.16 -2.38 -0.02 1.15 16 33 H 0.06 1.30 6.19 -2.39 -0.01 1.29 16 34 H 0.05 1.05 7.39 -2.39 -0.02 1.03 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 1.03 8.11 -2.39 -0.02 1.01 16 37 H 0.03 0.64 7.13 -2.39 -0.02 0.62 16 38 H 0.10 2.63 3.59 -2.39 -0.01 2.62 16 39 H 0.14 2.04 5.89 -2.91 -0.02 2.02 16 40 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.12 2.35 7.07 -2.91 -0.02 2.33 16 44 H 0.34 7.84 6.51 -89.69 -0.58 7.25 16 45 H 0.05 1.85 8.06 -2.38 -0.02 1.83 16 46 H 0.01 0.48 7.44 -2.38 -0.02 0.46 16 47 H 0.07 1.93 6.57 -2.38 -0.02 1.91 16 48 H 0.04 1.69 6.62 -2.38 -0.02 1.67 16 49 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 50 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.03 1.34 6.62 -2.39 -0.02 1.32 16 52 H 0.08 2.35 6.12 -2.39 -0.01 2.34 16 53 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 54 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 55 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -62.77 402.31 6.47 -56.30 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.26 Total: 22.94 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 5.06 Total: -51.60 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -0.88 Total: -74.36 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.77 6.47 -56.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554071995.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.040 kcal (2) G-P(sol) polarization free energy of solvation -62.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds