Wall clock time and date at job start Tue Mar 31 2020 11:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47106 * 60.00162 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47224 * 300.00294 * 6 5 4 10 10 N 1.46898 * 109.47328 * 239.99829 * 2 1 3 11 11 C 1.46900 * 110.99928 * 85.00050 * 10 2 1 12 12 H 1.09003 * 109.47253 * 34.99599 * 11 10 2 13 13 C 1.53002 * 109.47005 * 155.00057 * 11 10 2 14 14 C 1.52995 * 109.47057 * 294.99749 * 13 11 10 15 15 C 1.50697 * 109.47361 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00530 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99600 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00031 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47367 * 59.99858 * 19 17 15 21 21 H 1.48504 * 109.46687 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47060 * 299.99607 * 19 17 15 23 23 C 1.50700 * 109.47064 * 275.00078 * 11 10 2 24 24 C 1.38239 * 119.99898 * 319.72546 * 23 11 10 25 25 C 1.38237 * 120.00023 * 179.78597 * 24 23 11 26 26 C 1.38233 * 119.99740 * 0.44795 * 25 24 23 27 27 C 1.38236 * 120.00265 * 359.80587 * 26 25 24 28 28 C 1.38234 * 120.00168 * 139.99909 * 23 11 10 29 29 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 30 30 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 31 31 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 33 33 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.09002 * 109.47596 * 60.00070 * 7 6 5 37 37 H 1.08996 * 109.47407 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.46986 * 300.00235 * 7 6 5 39 39 H 1.09001 * 109.47289 * 60.00300 * 8 6 5 40 40 H 1.09004 * 109.47261 * 180.02562 * 8 6 5 41 41 H 1.09002 * 109.47153 * 300.00216 * 8 6 5 42 42 H 1.09004 * 109.47552 * 59.99646 * 9 6 5 43 43 H 1.09004 * 109.47298 * 179.97438 * 9 6 5 44 44 H 1.09001 * 109.46993 * 299.99360 * 9 6 5 45 45 H 1.00901 * 110.99566 * 321.04477 * 10 2 1 46 46 H 1.09001 * 109.47094 * 55.00255 * 13 11 10 47 47 H 1.09001 * 109.46642 * 175.00087 * 13 11 10 48 48 H 1.09000 * 109.47065 * 300.00112 * 14 13 11 49 49 H 1.09005 * 109.47043 * 60.00127 * 14 13 11 50 50 H 0.96997 * 120.00041 * 180.02562 * 18 17 15 51 51 H 1.07999 * 120.00078 * 359.97438 * 24 23 11 52 52 H 1.07997 * 120.00332 * 180.27181 * 25 24 23 53 53 H 1.08005 * 120.00122 * 179.82955 * 26 25 24 54 54 H 1.07999 * 119.99950 * 179.97438 * 27 26 25 55 55 H 1.08002 * 119.99863 * 359.97438 * 28 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0749 -1.3349 2.5627 7 6 3.6702 -2.8091 2.5009 8 6 5.5997 -1.2274 2.6269 9 6 3.4648 -0.6904 3.8090 10 7 2.0198 -0.6925 -1.1994 11 6 2.0826 0.2226 -2.3468 12 1 2.3649 1.2177 -2.0030 13 6 3.1223 -0.2853 -3.3478 14 6 4.5123 -0.2316 -2.7108 15 6 5.5365 -0.7312 -3.6968 16 1 5.2271 -1.0543 -4.6798 17 6 6.8687 -0.7758 -3.3442 18 7 7.2456 -0.3819 -2.1474 19 14 8.1383 -1.3945 -4.5668 20 1 8.1167 -0.5374 -5.7793 21 1 9.4874 -1.3424 -3.9484 22 1 7.8202 -2.7949 -4.9448 23 6 0.7325 0.2858 -3.0134 24 6 -0.0181 -0.8652 -3.1648 25 6 -1.2585 -0.8065 -3.7723 26 6 -1.7441 0.4015 -4.2367 27 6 -0.9913 1.5515 -4.0900 28 6 0.2472 1.4936 -3.4786 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0727 0.4261 35 1 3.8532 0.4370 1.3574 36 1 4.1048 -3.2683 1.6130 37 1 4.0332 -3.3232 3.3908 38 1 2.5839 -2.8861 2.4549 39 1 5.8885 -0.1773 2.6708 40 1 5.9631 -1.7420 3.5165 41 1 6.0340 -1.6869 1.7389 42 1 2.3784 -0.7673 3.7632 43 1 3.8278 -1.2049 4.6988 44 1 3.7531 0.3598 3.8531 45 1 1.4496 -1.4980 -1.4099 46 1 2.8887 -1.3135 -3.6242 47 1 3.1063 0.3429 -4.2384 48 1 4.7458 0.7966 -2.4344 49 1 4.5283 -0.8598 -1.8200 50 1 8.1828 -0.4129 -1.8994 51 1 0.3631 -1.8097 -2.8057 52 1 -1.8469 -1.7049 -3.8866 53 1 -2.7120 0.4470 -4.7138 54 1 -1.3706 2.4953 -4.4532 55 1 0.8354 2.3921 -3.3639 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556205136.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:14 Heat of formation + Delta-G solvation = -29.410126 kcal Electronic energy + Delta-G solvation = -27970.682744 eV Core-core repulsion = 24584.153894 eV Total energy + Delta-G solvation = -3386.528850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 317.241 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.80048 -39.18179 -37.74210 -35.74727 -34.34041 -31.93683 -31.78196 -30.67309 -29.57492 -28.08220 -28.05189 -27.56999 -25.05408 -24.50807 -23.50819 -22.48623 -21.42946 -21.07656 -19.34207 -18.44858 -17.86818 -16.79819 -16.54922 -16.17278 -15.88968 -15.68431 -15.54898 -15.24104 -14.92063 -14.70003 -14.59812 -14.28390 -14.16005 -13.96523 -13.76043 -13.54234 -13.48151 -13.24693 -13.13983 -12.87422 -12.74302 -12.64155 -12.51296 -12.47219 -12.33805 -12.22306 -12.09839 -11.87058 -11.77392 -11.66090 -11.54617 -11.29980 -11.15887 -11.15186 -11.04655 -10.94112 -10.44678 -9.78161 -9.50905 -9.08595 -8.10524 -6.20383 0.49850 0.53890 1.39124 1.41809 1.49370 2.44329 2.92492 3.21243 3.34397 3.78338 3.86492 3.99665 4.03950 4.05999 4.18765 4.22804 4.31881 4.33721 4.41660 4.45845 4.61125 4.63991 4.69827 4.72683 4.76690 4.78740 4.85251 4.86981 4.94377 4.96096 4.98696 5.01763 5.07584 5.12200 5.14438 5.15727 5.18482 5.21076 5.28594 5.33066 5.38907 5.40946 5.47020 5.55629 5.60209 5.62902 5.65160 5.66668 5.72958 5.81633 5.91403 6.08684 6.16186 6.35529 6.37732 6.68552 6.97832 7.46675 8.99500 Molecular weight = 317.24amu Principal moments of inertia in cm(-1) A = 0.006826 B = 0.005482 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4100.968482 B = 5106.800625 C = 8615.325891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.086 3.914 3 H 0.055 0.945 4 C -0.094 4.094 5 C -0.093 4.093 6 C -0.069 4.069 7 C -0.135 4.135 8 C -0.139 4.139 9 C -0.134 4.134 10 N -0.671 5.671 11 C 0.141 3.859 12 H 0.062 0.938 13 C -0.077 4.077 14 C 0.047 3.953 15 C -0.544 4.544 16 H 0.050 0.950 17 C 0.006 3.994 18 N -0.924 5.924 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.103 4.103 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.134 4.134 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.341 0.659 46 H 0.045 0.955 47 H 0.039 0.961 48 H -0.026 1.026 49 H 0.012 0.988 50 H 0.259 0.741 51 H 0.121 0.879 52 H 0.141 0.859 53 H 0.144 0.856 54 H 0.139 0.861 55 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.689 -0.285 6.913 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 H 0.073 0.927 4 C -0.132 4.132 5 C -0.131 4.131 6 C -0.069 4.069 7 C -0.192 4.192 8 C -0.196 4.196 9 C -0.191 4.191 10 N -0.302 5.302 11 C 0.031 3.969 12 H 0.080 0.920 13 C -0.116 4.116 14 C 0.010 3.990 15 C -0.582 4.582 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.564 5.564 19 Si 0.779 3.221 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.104 4.104 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.152 4.152 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.162 0.838 46 H 0.064 0.936 47 H 0.057 0.943 48 H -0.008 1.008 49 H 0.030 0.970 50 H 0.068 0.932 51 H 0.139 0.861 52 H 0.159 0.841 53 H 0.162 0.838 54 H 0.157 0.843 55 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.851 -0.199 7.206 19.251 hybrid contribution 0.560 0.083 -1.015 1.163 sum -17.291 -0.116 6.190 18.366 Atomic orbital electron populations 1.22454 0.95945 1.02245 1.02136 1.21635 0.93139 0.96993 0.90645 0.92687 1.21601 0.94619 1.00781 0.96163 1.21398 0.96349 0.98485 0.96869 1.20541 0.94485 0.96120 0.95733 1.21845 1.01723 0.94661 1.00949 1.21836 0.96059 1.00927 1.00802 1.21860 1.01163 0.99985 0.96130 1.60631 1.57473 1.09054 1.03080 1.20458 0.90313 0.95782 0.90360 0.92015 1.21387 0.94883 0.99129 0.96162 1.18747 0.90840 0.94024 0.95346 1.21718 0.93313 1.42837 1.00303 0.93175 1.25833 1.00671 0.95765 0.96955 1.70106 1.16669 1.48793 1.20878 0.85687 0.78036 0.79161 0.79254 1.19514 1.20843 1.19428 1.20697 0.96433 0.94294 0.99012 1.21026 0.95335 0.97558 1.00425 1.21376 0.95489 0.98939 0.97858 1.21436 1.00799 0.92408 1.00180 1.21385 0.94179 0.99632 0.98696 1.21205 0.96969 0.97347 0.99702 0.91510 0.93150 0.92025 0.90352 0.91401 0.93856 0.94832 0.94650 0.92100 0.91355 0.93770 0.91614 0.95201 0.91317 0.92085 0.93324 0.83821 0.93599 0.94271 1.00808 0.96956 0.93181 0.86125 0.84089 0.83778 0.84307 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 8.62 71.98 0.62 -3.09 16 2 C 0.09 2.34 2.59 44.92 0.12 2.45 16 3 H 0.05 1.69 7.43 -2.39 -0.02 1.68 16 4 C -0.09 -2.39 4.19 30.59 0.13 -2.26 16 5 C -0.09 -3.01 4.16 30.59 0.13 -2.88 16 6 C -0.07 -1.88 0.80 -52.19 -0.04 -1.92 16 7 C -0.13 -3.38 8.12 71.98 0.58 -2.79 16 8 C -0.14 -4.30 8.47 71.98 0.61 -3.69 16 9 C -0.13 -2.88 8.12 71.98 0.58 -2.30 16 10 N -0.67 -21.45 4.95 -473.29 -2.34 -23.80 16 11 C 0.14 4.89 2.22 44.17 0.10 4.99 16 12 H 0.06 2.32 7.29 -2.39 -0.02 2.30 16 13 C -0.08 -3.35 4.81 30.59 0.15 -3.20 16 14 C 0.05 2.60 4.86 29.85 0.15 2.74 16 15 C -0.54 -32.22 9.11 25.60 0.23 -31.99 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.34 5.46 84.66 0.46 0.80 16 18 N -0.92 -57.72 13.29 21.45 0.28 -57.43 16 19 Si 0.95 45.90 29.54 68.60 2.03 47.93 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.10 -2.94 2.92 -19.86 -0.06 -3.00 16 24 C -0.13 -3.15 8.43 22.27 0.19 -2.96 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 26 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 27 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 28 C -0.13 -3.54 9.65 22.27 0.22 -3.33 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.20 5.94 -2.39 -0.01 1.19 16 31 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.08 1.67 6.43 -2.39 -0.02 1.65 16 33 H 0.07 1.65 6.43 -2.39 -0.02 1.63 16 34 H 0.04 1.80 7.44 -2.39 -0.02 1.78 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.49 6.43 -2.39 -0.02 1.48 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.28 6.43 -2.39 -0.02 1.26 16 43 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.34 9.91 6.10 -89.69 -0.55 9.36 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 48 H -0.03 -1.60 8.14 -2.39 -0.02 -1.61 16 49 H 0.01 0.71 7.44 -2.38 -0.02 0.69 16 50 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 51 H 0.12 2.95 6.53 -2.91 -0.02 2.93 16 52 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 53 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 54 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 55 H 0.12 3.05 8.04 -2.91 -0.02 3.02 16 Total: -1.00 -66.81 419.74 5.07 -61.74 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.27 Total: 30.91 kcal Atomic # 6 Polarization: -64.19 SS G_CDS: 4.83 Total: -59.36 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -2.06 Total: -81.23 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -66.81 5.07 -61.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556205136.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.333 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds