Wall clock time and date at job start Tue Mar 31 2020 11:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46955 * 111.00194 * 2 1 4 4 C 1.53054 * 109.36439 * 183.19084 * 3 2 1 5 5 N 1.46959 * 109.36348 * 301.60058 * 4 3 2 6 6 C 1.46898 * 110.99685 * 183.18872 * 5 4 3 7 7 C 1.52997 * 109.47505 * 46.19816 * 6 5 4 8 8 C 1.52996 * 109.47599 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47525 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00202 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46891 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00449 * 359.72239 * 11 10 9 13 13 C 1.37885 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00035 * 179.72339 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 359.72191 * 13 11 10 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.46955 * 110.88242 * 59.32005 * 5 4 3 20 20 H 1.08995 * 109.48717 * 60.64731 * 19 5 4 21 21 C 1.50698 * 109.48628 * 180.69154 * 19 5 4 22 22 C 1.38232 * 120.00499 * 39.72725 * 21 19 5 23 23 C 1.38227 * 120.00202 * 179.78763 * 22 21 19 24 24 C 1.38241 * 120.00129 * 0.44142 * 23 22 21 25 25 C 1.38232 * 119.99732 * 359.80958 * 24 23 22 26 26 C 1.38234 * 119.99694 * 219.99666 * 21 19 5 27 27 C 1.46959 * 110.99968 * 123.80331 * 2 1 3 28 28 H 1.09001 * 109.46937 * 296.19853 * 1 2 3 29 29 H 1.08995 * 109.47143 * 56.19523 * 1 2 3 30 30 H 1.08998 * 109.47211 * 176.20147 * 1 2 3 31 31 H 1.08997 * 109.48782 * 303.15668 * 3 2 1 32 32 H 1.08997 * 109.48922 * 63.20640 * 3 2 1 33 33 H 1.09003 * 109.48898 * 181.63164 * 4 3 2 34 34 H 1.09007 * 109.48615 * 61.56388 * 4 3 2 35 35 H 1.08999 * 109.47288 * 286.19659 * 6 5 4 36 36 H 1.09004 * 109.47161 * 166.20034 * 6 5 4 37 37 H 1.09007 * 109.46821 * 59.99929 * 7 6 5 38 38 H 1.09004 * 109.47088 * 300.00262 * 7 6 5 39 39 H 1.08999 * 109.47014 * 59.99952 * 8 7 6 40 40 H 1.09004 * 109.47341 * 300.00385 * 8 7 6 41 41 H 1.00899 * 111.00328 * 303.95838 * 9 8 7 42 42 H 1.08998 * 109.47046 * 59.99771 * 10 9 8 43 43 H 1.09001 * 109.47014 * 299.99971 * 10 9 8 44 44 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 45 45 H 1.08005 * 119.99745 * 359.97438 * 22 21 19 46 46 H 1.07998 * 120.00260 * 180.27613 * 23 22 21 47 47 H 1.07997 * 119.99859 * 179.83425 * 24 23 22 48 48 H 1.07998 * 119.99817 * 180.02562 * 25 24 23 49 49 H 1.08005 * 120.00040 * 359.97438 * 26 21 19 50 50 H 1.08998 * 109.49310 * 56.84466 * 27 2 1 51 51 H 1.08997 * 109.48557 * 296.77122 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0804 5 7 4.0501 0.5657 1.0597 6 6 5.5191 0.5657 1.0596 7 6 6.0292 1.9862 0.8091 8 6 7.5592 1.9863 0.8096 9 7 8.0489 3.3501 0.5685 10 6 9.5174 3.3887 0.5616 11 6 9.9816 4.8006 0.3126 12 1 9.2583 5.5894 0.1689 13 6 11.3301 5.0841 0.2619 14 7 11.7353 6.3152 0.0392 15 14 12.5813 3.7193 0.5097 16 1 12.9136 3.1083 -0.8023 17 1 13.8128 4.2817 1.1200 18 1 12.0123 2.6831 1.4084 19 6 3.5235 -0.8062 1.0597 20 1 3.8253 -1.3116 0.1423 21 6 4.0691 -1.5542 2.2487 22 6 4.1895 -0.9177 3.4699 23 6 4.6859 -1.6051 4.5616 24 6 5.0705 -2.9264 4.4300 25 6 4.9549 -3.5614 3.2076 26 6 4.4544 -2.8752 2.1169 27 6 1.9956 -0.7633 1.1400 28 1 -0.3633 0.4537 0.9221 29 1 -0.3633 0.5717 -0.8539 30 1 -0.3633 -1.0254 -0.0681 31 1 1.6013 1.9128 -0.8602 32 1 1.6936 1.8774 0.9172 33 1 3.9179 2.3448 -0.0513 34 1 3.8253 0.8478 -1.0107 35 1 5.8824 -0.0949 0.2723 36 1 5.8825 0.2141 2.0253 37 1 5.6659 2.6468 1.5964 38 1 5.6658 2.3377 -0.1566 39 1 7.9228 1.3257 0.0226 40 1 7.9222 1.6349 1.7755 41 1 7.6737 3.7224 -0.2910 42 1 9.8942 2.7374 -0.2271 43 1 9.8944 3.0473 1.5257 44 1 12.6839 6.5147 0.0040 45 1 3.8930 0.1158 3.5717 46 1 4.7759 -1.1092 5.5167 47 1 5.4608 -3.4626 5.2823 48 1 5.2549 -4.5937 3.1048 49 1 4.3640 -3.3713 1.1618 50 1 1.6013 -1.7790 1.1110 51 1 1.6938 -0.2821 2.0703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569228791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:01 Heat of formation + Delta-G solvation = 41.094436 kcal Electronic energy + Delta-G solvation = -26613.221227 eV Core-core repulsion = 23126.209341 eV Total energy + Delta-G solvation = -3487.011886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.44251 -38.64382 -36.68364 -35.32794 -33.20789 -32.46319 -31.09811 -31.02440 -29.39072 -28.53370 -26.70646 -24.59101 -24.28793 -22.96341 -22.69984 -21.44704 -21.03915 -20.62629 -19.70842 -17.23277 -16.77401 -16.23073 -15.76657 -15.62220 -15.51250 -15.31783 -14.84640 -14.61364 -14.45969 -14.22209 -14.12140 -13.59811 -13.50774 -13.42284 -13.03281 -12.91163 -12.46372 -12.41771 -12.35608 -12.05266 -11.93847 -11.74707 -11.59238 -11.42637 -11.23504 -11.10600 -10.99025 -10.84302 -10.63945 -10.33021 -10.25964 -9.77451 -9.27272 -9.07125 -8.89162 -8.70752 -8.59225 -8.44233 -7.47087 -6.05266 -4.03042 1.14453 1.25247 3.28908 3.36378 3.39773 3.49781 3.60316 3.74593 4.42772 4.45997 4.65512 4.71656 4.79053 4.82988 4.87374 4.96804 5.00880 5.06858 5.11301 5.14802 5.24626 5.27469 5.28954 5.32243 5.39264 5.44694 5.52093 5.53127 5.57082 5.61745 5.71044 5.75904 5.79807 5.86303 5.91416 5.94988 6.02962 6.27929 6.36611 6.39127 6.42013 6.49227 6.65109 6.67201 6.80109 6.82513 6.95678 6.98076 7.03181 7.62321 7.90913 8.35089 8.66257 9.02804 9.56842 11.08082 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.002774 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.837923 B =10090.344408 C =11802.153789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.055 3.945 4 C 0.051 3.949 5 N -0.531 5.531 6 C 0.059 3.941 7 C -0.118 4.118 8 C 0.059 3.941 9 N -0.680 5.680 10 C 0.164 3.836 11 C -0.516 4.516 12 H 0.079 0.921 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.129 3.871 20 H 0.056 0.944 21 C -0.081 4.081 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.114 4.114 27 C 0.069 3.931 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.015 0.985 40 H 0.064 0.936 41 H 0.334 0.666 42 H -0.022 1.022 43 H 0.026 0.974 44 H 0.264 0.736 45 H 0.131 0.869 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.077 0.923 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.873 -20.082 3.995 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.077 4.077 5 N -0.256 5.256 6 C -0.069 4.069 7 C -0.156 4.156 8 C -0.072 4.072 9 N -0.310 5.310 10 C 0.036 3.964 11 C -0.554 4.554 12 H 0.097 0.903 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.705 3.295 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.192 1.192 19 C 0.020 3.980 20 H 0.074 0.926 21 C -0.082 4.082 22 C -0.108 4.108 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.132 4.132 27 C -0.059 4.059 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.082 0.918 41 H 0.151 0.849 42 H -0.004 1.004 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.096 0.904 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.759 -19.766 4.628 30.497 hybrid contribution 1.077 -1.137 -0.741 1.733 sum -21.682 -20.902 3.887 30.367 Atomic orbital electron populations 1.22335 0.87081 1.02170 1.00633 1.62147 1.07865 1.14324 1.42808 1.22225 0.94877 0.88962 1.01204 1.22301 0.93790 0.99678 0.91952 1.62206 1.08242 1.12283 1.42829 1.22132 0.85926 0.97435 1.01435 1.21706 0.95722 0.95694 1.02434 1.21861 0.93663 0.91542 1.00108 1.60477 1.10901 1.18197 1.41453 1.20002 0.83609 0.97531 0.95247 1.21072 0.92744 0.92949 1.48629 0.90289 1.24915 0.98327 0.95399 0.94743 1.69901 1.15453 1.18644 1.49973 0.86814 0.81187 0.82690 0.78761 1.20364 1.21118 1.19155 1.20523 0.93784 0.88723 0.94990 0.92593 1.19688 0.99798 0.93856 0.94834 1.21104 0.97747 1.00233 0.91703 1.21220 0.99399 0.94683 0.98920 1.21172 0.99964 0.95195 0.97535 1.21078 1.00174 0.99870 0.93055 1.21020 0.99247 0.94115 0.98835 1.22138 0.93236 0.98452 0.92077 0.95543 0.91253 0.91439 0.90200 0.93796 0.88799 0.93970 0.95063 0.90264 0.90295 0.92027 0.96649 0.91781 0.84933 1.00414 0.95598 0.92651 0.85129 0.86084 0.86312 0.86239 0.86338 0.90428 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.06 0.58 0.76 16 2 N -0.55 -5.00 4.97 -242.76 -1.21 -6.20 16 3 C 0.06 0.51 5.62 -3.77 -0.02 0.49 16 4 C 0.05 0.52 4.93 -3.76 -0.02 0.50 16 5 N -0.53 -5.75 4.00 -227.88 -0.91 -6.66 16 6 C 0.06 0.71 4.62 -3.83 -0.02 0.69 16 7 C -0.12 -1.60 4.74 -26.73 -0.13 -1.72 16 8 C 0.06 1.00 5.69 -3.83 -0.02 0.98 16 9 N -0.68 -14.36 6.49 -115.06 -0.75 -15.11 16 10 C 0.16 4.09 4.51 -4.98 -0.02 4.07 16 11 C -0.52 -15.05 9.87 -34.44 -0.34 -15.39 16 12 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 15 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 19 C 0.13 1.29 2.12 -68.81 -0.15 1.14 16 20 H 0.06 0.61 8.00 -51.93 -0.42 0.20 16 21 C -0.08 -0.81 3.94 -104.63 -0.41 -1.22 16 22 C -0.09 -0.92 8.06 -39.59 -0.32 -1.24 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 26 C -0.11 -1.06 9.67 -39.58 -0.38 -1.44 16 27 C 0.07 0.63 4.88 -3.76 -0.02 0.62 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.98 5.99 -51.93 -0.31 0.66 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.08 1.01 6.48 -51.93 -0.34 0.67 16 37 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.06 0.80 6.26 -51.93 -0.33 0.47 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.33 6.77 8.72 -39.29 -0.34 6.42 16 42 H -0.02 -0.54 7.58 -51.93 -0.39 -0.93 16 43 H 0.03 0.67 7.19 -51.93 -0.37 0.29 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.13 1.38 7.71 -52.48 -0.40 0.98 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 49 H 0.12 0.95 8.04 -52.48 -0.42 0.52 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -31.33 395.63 -12.61 -43.94 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -9.25 Total: 2.40 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.56 Total: -14.38 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -2.09 Total: -55.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.33 -12.61 -43.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569228791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.037 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds