Wall clock time and date at job start Tue Mar 31 2020 11:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48505 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99996 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47250 * 119.99765 * 179.72408 * 13 12 11 16 16 C 1.35169 * 123.14084 * 179.72836 * 15 13 12 17 17 S 1.70937 * 108.85497 * 179.87023 * 16 15 13 18 18 C 1.70765 * 91.14265 * 0.33000 * 17 16 15 19 19 Br 1.89093 * 124.72525 * 179.82239 * 18 17 16 20 20 N 1.28752 * 110.55153 * 359.80744 * 18 17 16 21 21 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 23 23 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 24 24 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 25 25 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 26 26 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 27 27 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 28 28 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 29 29 H 1.08004 * 125.56990 * 359.96483 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7874 -7.5936 -0.0087 15 6 2.9402 -8.4904 -0.0151 16 6 2.5602 -9.7876 -0.0161 17 16 3.9573 -10.7725 -0.0279 18 6 4.9689 -9.3967 -0.0210 19 35 6.8591 -9.4495 -0.0227 20 7 4.2653 -8.3184 -0.0148 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 2.8714 -3.6047 0.8890 25 1 2.8727 -3.6038 -0.8910 26 1 0.8541 -5.0447 -0.8923 27 1 0.8534 -5.0450 0.8877 28 1 3.3862 -5.9232 -0.0026 29 1 1.5405 -10.1435 -0.0118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692667203.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:57 Heat of formation + Delta-G solvation = -6.039161 kcal Electronic energy + Delta-G solvation = -15494.544095 eV Core-core repulsion = 12590.329639 eV Total energy + Delta-G solvation = -2904.214457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72353 -38.72860 -35.48747 -33.32563 -32.68561 -31.23077 -30.17297 -27.36321 -25.59570 -23.37577 -21.99610 -20.66881 -20.03339 -18.92802 -16.96138 -16.27005 -15.97000 -15.86742 -15.11531 -14.91889 -14.43035 -14.02756 -13.73459 -13.71638 -12.44649 -12.28158 -11.83133 -11.80313 -11.53054 -11.17300 -10.91367 -10.74849 -10.57921 -10.43618 -10.19135 -10.15365 -9.86462 -9.42990 -9.36784 -9.10242 -8.81115 -8.36549 -6.01021 -4.03806 -0.07118 0.18707 0.95381 1.02531 1.52792 3.22673 3.29160 3.31072 3.38610 3.42783 3.95047 4.45569 4.75579 4.81153 5.28584 5.34928 5.70617 5.76260 6.15019 6.40810 6.59713 6.69627 6.84654 6.99838 7.64364 7.64693 7.76652 7.97834 8.22062 8.39446 9.02998 9.60402 11.10312 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.002648 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.037153 B =10570.920847 C =11879.195334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.703 5.703 13 C 0.587 3.413 14 O -0.535 6.535 15 C 0.019 3.981 16 C -0.216 4.216 17 S 0.283 5.717 18 C -0.010 4.010 19 Br 0.061 6.939 20 N -0.407 5.407 21 H 0.260 0.740 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.408 0.592 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.728 -27.336 -0.068 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.353 5.353 13 C 0.369 3.631 14 O -0.413 6.413 15 C -0.118 4.118 16 C -0.359 4.359 17 S 0.536 5.464 18 C -0.366 4.366 19 Br 0.142 6.858 20 N -0.124 5.124 21 H 0.070 0.930 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.244 0.756 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 13.878 -27.868 -0.072 31.132 hybrid contribution -0.100 1.909 0.005 1.912 sum 13.778 -25.958 -0.068 29.388 Atomic orbital electron populations 1.69973 1.06051 1.26566 1.50721 1.25032 0.94866 0.99326 0.95299 0.86522 0.80077 0.83727 0.77579 1.19742 1.21009 1.21003 1.21245 0.93074 0.90898 1.50716 0.92547 1.19039 0.93831 0.90839 0.97688 1.21903 0.99803 0.93093 1.01136 1.21764 0.91783 0.84909 1.02281 1.46080 1.11749 1.05181 1.72278 1.16976 0.86506 0.82092 0.77547 1.90833 1.14889 1.84541 1.51013 1.20592 0.88913 0.94374 1.07924 1.26906 1.06950 0.96756 1.05275 1.82914 0.92487 1.08279 1.62740 1.28341 0.99892 0.95397 1.12971 1.96898 0.93224 1.98118 1.97591 1.66943 1.04138 1.29702 1.11627 0.92999 0.96216 0.96219 0.92571 0.92573 0.91382 0.91362 0.75640 0.78357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 15 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 15 10 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 15 11 C 0.11 2.08 5.67 -4.04 -0.02 2.06 15 12 N -0.70 -11.17 5.55 -61.43 -0.34 -11.51 15 13 C 0.59 9.36 7.80 -12.60 -0.10 9.26 15 14 O -0.54 -9.94 16.71 5.25 0.09 -9.86 15 15 C 0.02 0.24 6.70 -84.52 -0.57 -0.32 15 16 C -0.22 -2.09 10.61 29.64 0.31 -1.78 15 17 S 0.28 1.97 22.95 -107.50 -2.47 -0.50 15 18 C -0.01 -0.09 7.84 51.47 0.40 0.31 15 19 Br 0.06 0.49 34.12 -68.01 -2.32 -1.83 15 20 N -0.41 -5.02 10.13 -10.75 -0.11 -5.13 15 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 26 H 0.07 1.27 8.14 -51.92 -0.42 0.85 15 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 28 H 0.41 5.91 7.99 -40.82 -0.33 5.58 15 29 H 0.20 1.63 8.03 -52.48 -0.42 1.21 15 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -32.24 297.98 -8.43 -40.67 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.83 Total: -0.67 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.66 Total: -6.10 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.29 Total: -42.87 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.47 Total: -0.50 kcal Atomic # 35 Polarization: 0.49 SS G_CDS: -2.32 Total: -1.83 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.24 -8.43 -40.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692667203.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.629 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds