Wall clock time and date at job start Tue Mar 31 2020 11:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99770 * 3 2 1 6 6 H 1.07998 * 119.99629 * 120.00096 * 5 3 2 7 7 C 1.37875 * 119.99955 * 300.00667 * 5 3 2 8 8 N 1.31515 * 119.99932 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99908 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47233 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47364 * 119.99503 * 9 7 5 12 12 H 1.48500 * 109.46997 * 239.99827 * 9 7 5 13 13 N 1.46500 * 109.47473 * 295.00136 * 3 2 1 14 14 C 1.34768 * 120.00056 * 84.99704 * 13 3 2 15 15 O 1.21635 * 120.00201 * 0.02562 * 14 13 3 16 16 C 1.47256 * 119.99960 * 180.02562 * 14 13 3 17 17 C 1.35169 * 123.13764 * 179.73245 * 16 14 13 18 18 S 1.70933 * 108.85327 * 179.87222 * 17 16 14 19 19 C 1.70769 * 91.14308 * 0.32973 * 18 17 16 20 20 Br 1.89094 * 124.72705 * 179.82971 * 19 18 17 21 21 N 1.28749 * 110.54541 * 359.80707 * 19 18 17 22 22 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 24 24 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 25 25 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 26 26 H 1.08998 * 109.47250 * 120.00119 * 2 1 3 27 27 H 0.97003 * 119.99476 * 180.02562 * 8 7 5 28 28 H 0.97001 * 119.99547 * 264.99875 * 13 3 2 29 29 H 1.08004 * 125.57167 * 359.96693 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3373 2.1732 9 14 6.0050 0.8800 1.3812 10 1 6.5989 1.5443 0.1932 11 1 6.4000 1.6157 2.6092 12 1 6.4962 -0.5190 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6325 -0.4314 16 6 0.0454 3.3223 -2.6253 17 6 -1.1596 3.9056 -2.8118 18 16 -1.2205 4.5545 -4.3920 19 6 0.3622 4.0017 -4.7169 20 35 1.2747 4.2492 -6.3545 21 7 0.8478 3.3934 -3.6913 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.8293 -0.0605 2.9502 28 1 2.2720 2.1232 -1.9977 29 1 -1.9535 3.9551 -2.0812 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692669941.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:26 Heat of formation + Delta-G solvation = 3.660478 kcal Electronic energy + Delta-G solvation = -16526.089920 eV Core-core repulsion = 13622.296071 eV Total energy + Delta-G solvation = -2903.793849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32642 -38.32162 -35.11226 -32.46696 -32.30992 -30.92484 -29.81613 -27.28989 -25.45277 -23.15025 -22.07235 -19.95299 -19.50145 -18.75549 -16.91384 -15.95219 -15.49906 -15.33133 -15.03702 -14.24198 -14.11999 -13.72386 -13.22128 -12.70563 -12.23961 -12.01783 -11.56079 -11.26083 -11.24798 -10.96841 -10.92325 -10.84014 -10.32059 -10.19353 -10.10784 -9.85447 -9.65862 -9.32300 -9.04584 -9.00240 -8.50311 -7.85450 -6.11960 -4.20789 0.25045 0.45132 1.24037 1.33520 1.96451 3.25257 3.33137 3.36874 3.82786 3.95769 4.32803 4.49154 5.11063 5.19592 5.26672 5.80430 6.38325 6.44753 6.64136 7.03684 7.04730 7.19503 7.33811 7.39806 7.62727 7.73859 7.89234 8.16580 8.63029 8.75559 9.04521 9.46069 10.93595 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.004030 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.738708 B = 6946.099586 C = 8089.716847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.683 5.683 14 C 0.575 3.425 15 O -0.540 6.540 16 C 0.027 3.973 17 C -0.220 4.220 18 S 0.263 5.737 19 C -0.009 4.009 20 Br 0.053 6.947 21 N -0.404 5.404 22 H 0.024 0.976 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.101 0.899 27 H 0.264 0.736 28 H 0.398 0.602 29 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 8.815 -17.962 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.329 5.329 14 C 0.356 3.644 15 O -0.419 6.419 16 C -0.109 4.109 17 C -0.362 4.362 18 S 0.514 5.486 19 C -0.366 4.366 20 Br 0.134 6.866 21 N -0.121 5.121 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.232 0.768 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.775 9.064 -18.278 22.209 hybrid contribution 1.443 -0.571 0.904 1.796 sum -7.332 8.493 -17.374 20.682 Atomic orbital electron populations 1.21846 0.98377 0.98166 1.01127 1.21943 0.92606 0.99626 1.02494 1.18906 0.94522 0.89290 0.80592 0.93044 1.21271 0.90562 1.38938 1.06361 0.91878 1.24876 0.98692 0.94747 0.95326 1.69904 1.35055 1.37731 1.09338 0.86386 0.84787 0.77782 0.78137 1.19663 1.20882 1.20853 1.46427 1.13887 1.53712 1.18883 1.16957 0.83599 0.79439 0.84390 1.90799 1.51893 1.60817 1.38404 1.20977 0.90862 1.03927 0.95171 1.26858 1.03146 1.03534 1.02693 1.82752 1.10902 1.49850 1.05048 1.28275 0.99794 1.08789 0.99718 1.96842 1.77017 1.95564 1.17156 1.66956 1.33305 1.13681 0.98162 0.95701 0.93043 0.94476 0.94875 0.88061 0.92608 0.76789 0.78554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 15 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 15 3 C 0.27 6.87 2.24 -69.08 -0.15 6.72 15 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 15 5 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 15 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 15 8 N -0.88 -24.77 11.29 55.43 0.63 -24.14 15 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 13 N -0.68 -15.13 5.02 -56.06 -0.28 -15.41 15 14 C 0.58 12.00 6.36 -12.60 -0.08 11.92 15 15 O -0.54 -12.46 13.85 5.25 0.07 -12.39 15 16 C 0.03 0.46 6.70 -84.52 -0.57 -0.11 15 17 C -0.22 -2.88 10.61 29.64 0.31 -2.57 15 18 S 0.26 2.56 22.95 -107.50 -2.47 0.10 15 19 C -0.01 -0.12 7.84 51.47 0.40 0.29 15 20 Br 0.05 0.56 34.12 -68.01 -2.32 -1.77 15 21 N -0.40 -6.44 10.13 -10.75 -0.11 -6.55 15 22 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.05 1.21 7.84 -51.93 -0.41 0.80 15 24 H 0.04 0.81 5.64 -51.93 -0.29 0.52 15 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.10 2.73 5.95 -51.93 -0.31 2.42 15 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 28 H 0.40 8.32 8.06 -40.82 -0.33 7.99 15 29 H 0.20 2.30 8.03 -52.48 -0.42 1.88 15 LS Contribution 285.40 15.07 4.30 4.30 Total: -1.00 -29.69 285.40 -8.05 -37.73 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -2.54 Total: 5.04 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.31 Total: -2.77 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.24 Total: -46.10 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.47 Total: 0.10 kcal Atomic # 35 Polarization: 0.56 SS G_CDS: -2.32 Total: -1.77 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.69 -8.05 -37.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692669941.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.395 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds