Wall clock time and date at job start Tue Mar 31 2020 11:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46966 * 2 1 4 4 H 1.09006 * 109.47362 * 305.37453 * 3 2 1 5 5 C 1.50700 * 109.46868 * 185.37766 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79726 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79838 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47239 * 65.37606 * 3 2 1 14 14 C 1.34775 * 120.00116 * 274.99976 * 13 3 2 15 15 O 1.21634 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.47255 * 120.00024 * 179.97438 * 14 13 3 17 17 C 1.35172 * 123.13669 * 179.72906 * 16 14 13 18 18 S 1.70932 * 108.85234 * 179.90603 * 17 16 14 19 19 C 1.70768 * 91.14234 * 0.30179 * 18 17 16 20 20 Br 1.89100 * 124.72357 * 179.81969 * 19 18 17 21 21 N 1.28741 * 110.54934 * 359.82329 * 19 18 17 22 22 H 1.09009 * 109.47424 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47649 * 59.99584 * 1 2 3 24 24 H 1.09005 * 109.47114 * 299.99793 * 1 2 3 25 25 H 1.08991 * 109.47531 * 120.00548 * 2 1 3 26 26 H 1.09005 * 109.47114 * 240.00207 * 2 1 3 27 27 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 28 28 H 0.97003 * 119.99975 * 94.99493 * 13 3 2 29 29 H 1.07997 * 125.57477 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6001 1.9834 -0.8380 5 6 3.5410 1.4445 -0.1332 6 1 4.1542 1.8170 0.6742 7 6 4.1316 0.9711 -1.2855 8 7 3.3876 0.6476 -2.3206 9 14 5.9885 0.7892 -1.3767 10 1 6.3862 -0.5218 -0.8037 11 1 6.4240 0.8624 -2.7945 12 1 6.6315 1.8824 -0.6043 13 7 1.6601 2.0947 1.2555 14 6 0.4436 2.6613 1.3795 15 8 -0.3389 2.6316 0.4487 16 6 0.0616 3.3164 2.6417 17 6 -1.1383 3.9086 2.8333 18 16 -1.1933 4.5451 4.4188 19 6 0.3917 3.9923 4.7323 20 35 1.3146 4.2368 6.3647 21 7 0.8709 3.3861 3.7026 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 0.8898 26 1 1.8933 -0.5138 -0.8900 27 1 3.8031 0.3148 -3.1315 28 1 2.2842 2.1187 1.9977 29 1 -1.9328 3.9686 2.1043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692669944.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:28 Heat of formation + Delta-G solvation = -18.420595 kcal Electronic energy + Delta-G solvation = -16517.953627 eV Core-core repulsion = 13613.202271 eV Total energy + Delta-G solvation = -2904.751356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60666 -39.84039 -36.98148 -34.32848 -33.41337 -32.81066 -30.88418 -29.18008 -26.78994 -24.97007 -23.53567 -21.65517 -21.00729 -20.16648 -18.52492 -17.53769 -17.06085 -16.71823 -16.61349 -15.91989 -15.63075 -14.90461 -14.68117 -14.62206 -13.92423 -13.48066 -13.32334 -13.11715 -12.93576 -12.65450 -12.24952 -12.21561 -12.10812 -11.81296 -11.66184 -11.16391 -11.11035 -10.94019 -10.80446 -10.56345 -10.04377 -9.67499 -8.21150 -6.35198 -0.75796 -0.44760 0.29260 0.35741 0.72321 1.43116 1.44153 1.53925 2.30405 2.35282 2.56734 3.10192 3.20004 4.03220 4.05808 4.44513 4.51239 4.51521 4.70060 5.03042 5.20108 5.38329 5.46373 5.56988 5.71523 5.80995 6.04263 6.08484 6.71118 6.88121 7.26699 7.42403 8.87194 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.004029 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.522092 B = 6947.504270 C = 8090.966192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C 0.276 3.724 4 H 0.010 0.990 5 C -0.553 4.553 6 H 0.066 0.934 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.688 5.688 14 C 0.574 3.426 15 O -0.571 6.571 16 C -0.007 4.007 17 C -0.221 4.221 18 S 0.392 5.608 19 C -0.036 4.036 20 Br 0.072 6.928 21 N -0.435 5.435 22 H 0.050 0.950 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.267 0.733 28 H 0.404 0.596 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 9.017 20.648 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 C 0.173 3.827 4 H 0.028 0.972 5 C -0.591 4.591 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.335 5.335 14 C 0.358 3.642 15 O -0.452 6.452 16 C -0.144 4.144 17 C -0.365 4.365 18 S 0.645 5.355 19 C -0.392 4.392 20 Br 0.153 6.847 21 N -0.153 5.153 22 H 0.069 0.931 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.239 0.761 29 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.183 9.306 21.001 24.738 hybrid contribution 1.463 -0.787 -1.484 2.228 sum -7.720 8.519 19.517 22.651 Atomic orbital electron populations 1.21685 0.96457 0.99583 1.00466 1.21710 0.94326 0.98718 1.00548 1.18495 0.93994 0.89347 0.80835 0.97221 1.21507 0.91355 1.43669 1.02604 0.91621 1.25729 1.03243 0.94508 0.94535 1.70098 1.37411 1.43797 1.03819 0.85427 0.79150 0.78978 0.77226 1.19478 1.20909 1.19190 1.46205 1.14876 1.54563 1.17821 1.17447 0.82521 0.78539 0.85665 1.90766 1.52115 1.61785 1.40556 1.20301 0.92813 1.06869 0.94385 1.27205 1.02137 1.01808 1.05327 1.82342 1.06647 1.46194 1.00324 1.28719 1.01974 1.08734 0.99730 1.96861 1.76755 1.95411 1.15693 1.66876 1.34297 1.15383 0.98756 0.93069 0.94918 0.93954 0.93821 0.92174 0.92439 0.76133 0.77454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.52 71.98 0.61 -5.01 15 2 C -0.11 -5.71 5.49 30.59 0.17 -5.54 15 3 C 0.28 14.71 2.11 44.25 0.09 14.80 15 4 H 0.01 0.61 7.55 -2.38 -0.02 0.60 15 5 C -0.55 -30.54 8.67 25.60 0.22 -30.32 15 6 H 0.07 3.49 7.73 -2.91 -0.02 3.47 15 7 C 0.02 1.14 5.19 84.65 0.44 1.58 15 8 N -0.91 -53.24 12.00 21.45 0.26 -52.98 15 9 Si 0.97 43.16 29.54 68.60 2.03 45.19 15 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 13 N -0.69 -31.39 5.02 -449.54 -2.26 -33.65 15 14 C 0.57 24.53 6.38 86.61 0.55 25.09 15 15 O -0.57 -27.26 13.85 -4.14 -0.06 -27.31 15 16 C -0.01 -0.23 6.70 40.54 0.27 0.05 15 17 C -0.22 -5.36 10.61 67.11 0.71 -4.64 15 18 S 0.39 6.21 22.95 -56.49 -1.30 4.91 15 19 C -0.04 -0.84 7.84 130.70 1.03 0.19 15 20 Br 0.07 1.34 34.12 -20.37 -0.70 0.64 15 21 N -0.43 -13.44 10.13 -187.92 -1.90 -15.34 15 22 H 0.05 2.00 8.14 -2.38 -0.02 1.98 15 23 H 0.03 1.57 7.87 -2.39 -0.02 1.55 15 24 H 0.04 1.86 5.64 -2.38 -0.01 1.85 15 25 H 0.04 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.06 3.30 6.64 -2.38 -0.02 3.28 15 27 H 0.27 14.65 8.31 -92.71 -0.77 13.88 15 28 H 0.40 17.26 8.05 -92.71 -0.75 16.52 15 29 H 0.21 4.44 8.03 -2.91 -0.02 4.42 15 Total: -1.00 -66.90 286.55 0.63 -66.28 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.45 Total: 16.09 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.10 Total: -3.82 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -3.90 Total: -101.97 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -1.30 Total: 4.91 kcal Atomic # 35 Polarization: 1.34 SS G_CDS: -0.70 Total: 0.64 kcal Total: -66.90 0.63 -66.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692669944.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.855 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds