Wall clock time and date at job start Tue Mar 31 2020 11:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47457 * 2 1 4 4 C 1.50697 * 109.47146 * 119.99732 * 2 1 3 5 5 H 1.07997 * 120.00394 * 119.99861 * 4 2 1 6 6 C 1.37886 * 120.00117 * 300.00040 * 4 2 1 7 7 N 1.31515 * 119.99593 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00311 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47271 * 59.99645 * 8 6 4 10 10 H 1.48495 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47040 * 300.00144 * 8 6 4 12 12 N 1.46503 * 109.47350 * 239.99517 * 2 1 3 13 13 C 1.46494 * 119.99988 * 300.00259 * 12 2 1 14 14 C 1.34781 * 119.99758 * 119.99946 * 12 2 1 15 15 O 1.21633 * 120.00021 * 3.33881 * 14 12 2 16 16 C 1.47248 * 119.99525 * 183.33786 * 14 12 2 17 17 C 1.35167 * 123.13345 * 184.12589 * 16 14 12 18 18 S 1.70938 * 108.85344 * 179.87516 * 17 16 14 19 19 C 1.70766 * 91.13937 * 0.32744 * 18 17 16 20 20 Br 1.89106 * 124.72353 * 179.82555 * 19 18 17 21 21 N 1.28742 * 110.55542 * 359.81222 * 19 18 17 22 22 H 1.09005 * 109.46691 * 60.00027 * 1 2 3 23 23 H 1.08995 * 109.46800 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47093 * 300.00267 * 1 2 3 25 25 H 0.97003 * 120.00014 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47131 * 263.97390 * 13 12 2 27 27 H 1.09002 * 109.47128 * 143.97194 * 13 12 2 28 28 H 1.09005 * 109.47131 * 23.97874 * 13 12 2 29 29 H 1.08000 * 125.57885 * 359.96408 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1208 4.0083 10 1 1.8258 -0.4203 5.2204 11 1 1.8257 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.1372 1.1096 -1.8612 16 6 3.2234 -0.7068 -3.3214 17 6 4.0649 -0.1404 -4.2147 18 16 4.3185 -1.2331 -5.5045 19 6 3.2792 -2.3797 -4.7824 20 35 2.8693 -4.0741 -5.5153 21 7 2.8137 -1.9301 -3.6695 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7080 1.1610 3.4844 26 1 2.4677 -2.7352 -1.0661 27 1 1.5190 -2.2597 -2.4952 28 1 0.7433 -2.3284 -0.8947 29 1 4.5062 0.8415 -4.1273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709594169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:06 Heat of formation + Delta-G solvation = 30.050125 kcal Electronic energy + Delta-G solvation = -16722.219223 eV Core-core repulsion = 13819.569715 eV Total energy + Delta-G solvation = -2902.649508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.44916 -38.19906 -35.39945 -32.81394 -32.36480 -29.90493 -29.45232 -26.02230 -25.67985 -25.14855 -22.46360 -20.33157 -19.44089 -17.88052 -16.44463 -16.14987 -15.64848 -15.33096 -15.01410 -14.18947 -13.95468 -13.70389 -13.02473 -12.56951 -12.36587 -12.23068 -11.58526 -11.49602 -11.30387 -11.03595 -10.89361 -10.79393 -10.69928 -10.25487 -10.14559 -9.85000 -9.63041 -9.20936 -9.07482 -9.00368 -8.41336 -7.54685 -6.05237 -4.12858 0.25974 0.45644 1.23996 1.34666 1.96138 3.30442 3.34697 3.37181 3.80092 3.87567 4.36791 4.44932 5.10770 5.17834 5.25903 5.57291 6.17454 6.41617 6.65530 6.80585 6.88456 7.04430 7.13222 7.45956 7.51559 7.73068 8.02041 8.20012 8.50967 8.80221 8.98408 9.53054 11.00164 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.003963 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.876742 B = 7063.086540 C = 7663.917131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.567 5.567 13 C 0.070 3.930 14 C 0.573 3.427 15 O -0.546 6.546 16 C 0.032 3.968 17 C -0.219 4.219 18 S 0.263 5.737 19 C -0.015 4.015 20 Br 0.053 6.947 21 N -0.395 5.395 22 H 0.012 0.988 23 H 0.032 0.968 24 H 0.095 0.905 25 H 0.264 0.736 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -9.254 -20.164 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.295 5.295 13 C -0.074 4.074 14 C 0.356 3.644 15 O -0.425 6.425 16 C -0.105 4.105 17 C -0.361 4.361 18 S 0.515 5.485 19 C -0.371 4.371 20 Br 0.134 6.866 21 N -0.113 5.113 22 H 0.031 0.969 23 H 0.051 0.949 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.935 -9.503 -20.704 23.309 hybrid contribution 0.038 0.124 1.987 1.991 sum 4.973 -9.379 -18.718 21.518 Atomic orbital electron populations 1.22102 0.97914 0.99608 1.00896 1.19046 0.91047 0.94475 0.79787 0.91819 1.21271 1.31873 1.12981 0.90178 0.92279 1.24886 0.94947 0.94987 0.98929 1.69869 1.36332 1.22636 1.23870 0.86532 0.79230 0.79606 0.81885 1.20251 1.21148 1.20204 1.48147 1.46719 1.12304 1.22335 1.22244 1.00336 0.81555 1.03288 1.17031 0.80214 0.85557 0.81647 1.90777 1.57506 1.17344 1.76864 1.20947 1.00001 0.90065 0.99443 1.26841 1.03835 1.07187 0.98262 1.82741 1.40736 1.04096 1.20896 1.28551 1.06610 1.01971 0.99952 1.96843 1.94037 1.15569 1.80156 1.67398 1.21109 1.11241 1.11585 0.96923 0.94901 0.88639 0.92623 0.93955 0.88341 0.91502 0.78587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.96 37.16 0.33 -3.29 15 2 C 0.26 6.79 2.63 -69.08 -0.18 6.61 15 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 15 4 C -0.52 -14.66 8.37 -34.44 -0.29 -14.94 15 5 H 0.06 1.65 7.65 -52.49 -0.40 1.24 15 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 15 7 N -0.89 -25.48 11.32 55.43 0.63 -24.86 15 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 15 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 15 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 15 12 N -0.57 -13.07 2.75 -176.60 -0.49 -13.56 15 13 C 0.07 1.37 8.90 59.84 0.53 1.90 15 14 C 0.57 12.70 7.65 -12.60 -0.10 12.60 15 15 O -0.55 -13.65 16.05 5.25 0.08 -13.56 15 16 C 0.03 0.55 6.53 -84.52 -0.55 0.00 15 17 C -0.22 -2.94 10.61 29.64 0.31 -2.63 15 18 S 0.26 2.57 22.95 -107.50 -2.47 0.10 15 19 C -0.02 -0.19 7.84 51.47 0.40 0.21 15 20 Br 0.05 0.53 34.12 -68.01 -2.32 -1.79 15 21 N -0.40 -6.21 6.66 -10.75 -0.07 -6.28 15 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 15 23 H 0.03 0.75 6.67 -51.93 -0.35 0.41 15 24 H 0.10 2.55 6.07 -51.93 -0.32 2.23 15 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.10 1.76 4.89 -53.97 -0.26 1.50 15 28 H 0.07 1.31 6.44 -51.93 -0.33 0.98 15 29 H 0.20 2.39 8.03 -52.49 -0.42 1.97 15 LS Contribution 282.76 15.07 4.26 4.26 Total: -1.00 -31.24 282.76 -7.44 -38.69 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -2.42 Total: -1.65 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 0.37 Total: 2.17 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.07 Total: -44.69 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.08 Total: -13.56 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.47 Total: 0.10 kcal Atomic # 35 Polarization: 0.53 SS G_CDS: -2.32 Total: -1.79 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.24 -7.44 -38.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709594169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.738 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds