Wall clock time and date at job start Tue Mar 31 2020 11:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47457 * 2 1 4 4 C 1.50697 * 109.47146 * 119.99732 * 2 1 3 5 5 H 1.07997 * 120.00394 * 119.99861 * 4 2 1 6 6 C 1.37886 * 120.00117 * 300.00040 * 4 2 1 7 7 N 1.31515 * 119.99593 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00311 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47271 * 59.99645 * 8 6 4 10 10 H 1.48495 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.47040 * 300.00144 * 8 6 4 12 12 N 1.46503 * 109.47350 * 239.99517 * 2 1 3 13 13 C 1.46494 * 119.99988 * 300.00259 * 12 2 1 14 14 C 1.34781 * 119.99758 * 119.99946 * 12 2 1 15 15 O 1.21633 * 120.00021 * 3.33881 * 14 12 2 16 16 C 1.47248 * 119.99525 * 183.33786 * 14 12 2 17 17 C 1.35167 * 123.13345 * 184.12589 * 16 14 12 18 18 S 1.70938 * 108.85344 * 179.87516 * 17 16 14 19 19 C 1.70766 * 91.13937 * 0.32744 * 18 17 16 20 20 Br 1.89106 * 124.72353 * 179.82555 * 19 18 17 21 21 N 1.28742 * 110.55542 * 359.81222 * 19 18 17 22 22 H 1.09005 * 109.46691 * 60.00027 * 1 2 3 23 23 H 1.08995 * 109.46800 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47093 * 300.00267 * 1 2 3 25 25 H 0.97003 * 120.00014 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47131 * 263.97390 * 13 12 2 27 27 H 1.09002 * 109.47128 * 143.97194 * 13 12 2 28 28 H 1.09005 * 109.47131 * 23.97874 * 13 12 2 29 29 H 1.08000 * 125.57885 * 359.96408 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1208 4.0083 10 1 1.8258 -0.4203 5.2204 11 1 1.8257 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0833 15 8 3.1372 1.1096 -1.8612 16 6 3.2234 -0.7068 -3.3214 17 6 4.0649 -0.1404 -4.2147 18 16 4.3185 -1.2331 -5.5045 19 6 3.2792 -2.3797 -4.7824 20 35 2.8693 -4.0741 -5.5153 21 7 2.8137 -1.9301 -3.6695 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7080 1.1610 3.4844 26 1 2.4677 -2.7352 -1.0661 27 1 1.5190 -2.2597 -2.4952 28 1 0.7433 -2.3284 -0.8947 29 1 4.5062 0.8415 -4.1273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709594169.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:06 Heat of formation + Delta-G solvation = 9.591045 kcal Electronic energy + Delta-G solvation = -16723.106395 eV Core-core repulsion = 13819.569715 eV Total energy + Delta-G solvation = -2903.536680 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.76202 -39.75341 -37.27351 -34.81438 -33.35764 -31.52651 -30.86418 -27.67359 -27.35196 -26.87607 -23.93365 -21.93513 -20.71117 -19.35864 -18.48051 -17.63336 -17.14820 -16.76960 -16.64009 -15.87368 -15.47005 -14.78904 -14.69401 -14.44863 -14.02412 -13.61567 -13.34137 -13.04758 -12.91837 -12.73826 -12.66078 -12.25299 -12.21102 -12.15395 -11.75171 -11.24715 -11.15514 -10.80700 -10.57191 -10.50518 -10.02620 -9.36042 -8.17413 -6.34272 -0.76412 -0.44351 0.28789 0.34696 0.68822 1.39539 1.41891 1.49805 2.20442 2.28629 2.45153 3.09969 3.12418 3.87856 4.00693 4.38080 4.52954 4.75022 4.83036 4.85678 5.01576 5.23007 5.39895 5.56421 5.63272 5.94565 6.07381 6.11570 6.69812 6.71435 7.16672 7.38481 8.87010 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.003963 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.876742 B = 7063.086540 C = 7663.917131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.015 0.985 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.966 3.034 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.265 1.265 12 N -0.579 5.579 13 C 0.077 3.923 14 C 0.565 3.435 15 O -0.590 6.590 16 C -0.002 4.002 17 C -0.223 4.223 18 S 0.397 5.603 19 C -0.038 4.038 20 Br 0.077 6.923 21 N -0.423 5.423 22 H 0.021 0.979 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.267 0.733 26 H 0.039 0.961 27 H 0.122 0.878 28 H 0.062 0.938 29 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -11.076 -22.026 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.033 0.967 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.189 1.189 12 N -0.307 5.307 13 C -0.065 4.065 14 C 0.351 3.649 15 O -0.472 6.472 16 C -0.138 4.138 17 C -0.366 4.366 18 S 0.650 5.350 19 C -0.393 4.393 20 Br 0.157 6.843 21 N -0.141 5.141 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.139 0.861 28 H 0.081 0.919 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.931 -11.364 -22.608 25.989 hybrid contribution -0.175 0.680 2.355 2.458 sum 5.755 -10.684 -20.253 23.611 Atomic orbital electron populations 1.21891 0.96804 1.00147 1.00223 1.18672 0.91868 0.92325 0.81271 0.96657 1.21485 1.32295 1.13083 0.91253 0.92736 1.25724 0.94957 0.95635 1.01899 1.70000 1.36980 1.23712 1.24668 0.85492 0.78426 0.78931 0.78071 1.20252 1.20369 1.18924 1.48133 1.47348 1.13479 1.21749 1.22344 0.99826 0.79560 1.04781 1.17680 0.79100 0.85246 0.82871 1.90726 1.58954 1.19281 1.78258 1.20165 1.03220 0.91659 0.98764 1.27163 1.02004 1.08368 0.99087 1.82331 1.36719 0.99660 1.16271 1.28955 1.07082 1.03575 0.99679 1.96876 1.94088 1.14099 1.79190 1.67166 1.22633 1.10856 1.13467 0.95975 0.93595 0.90809 0.92417 0.94195 0.86092 0.91913 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 8.96 71.98 0.64 -6.08 15 2 C 0.26 14.40 2.63 44.24 0.12 14.51 15 3 H 0.02 0.99 6.90 -2.39 -0.02 0.98 15 4 C -0.54 -31.19 8.37 25.60 0.21 -30.97 15 5 H 0.05 3.10 7.65 -2.91 -0.02 3.08 15 6 C 0.02 1.00 5.30 84.66 0.45 1.45 15 7 N -0.92 -53.79 11.32 21.45 0.24 -53.55 15 8 Si 0.97 44.39 29.54 68.60 2.03 46.42 15 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 15 12 N -0.58 -27.62 2.75 -830.87 -2.29 -29.91 15 13 C 0.08 3.07 8.90 127.77 1.14 4.20 15 14 C 0.57 25.96 7.65 86.61 0.66 26.62 15 15 O -0.59 -31.07 16.05 -4.14 -0.07 -31.14 15 16 C 0.00 -0.06 6.53 40.53 0.26 0.21 15 17 C -0.22 -5.59 10.61 67.11 0.71 -4.88 15 18 S 0.40 6.21 22.95 -56.49 -1.30 4.91 15 19 C -0.04 -0.85 7.84 130.70 1.03 0.18 15 20 Br 0.08 1.31 34.12 -20.37 -0.70 0.62 15 21 N -0.42 -12.70 6.66 -187.92 -1.25 -13.95 15 22 H 0.02 1.02 8.14 -2.38 -0.02 1.00 15 23 H 0.05 2.15 6.67 -2.39 -0.02 2.14 15 24 H 0.07 4.08 6.07 -2.39 -0.01 4.06 15 25 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 27 H 0.12 4.27 4.89 -6.41 -0.03 4.24 15 28 H 0.06 2.47 6.44 -2.38 -0.02 2.46 15 29 H 0.20 4.68 8.03 -2.91 -0.02 4.66 15 Total: -1.00 -70.76 282.76 3.07 -67.69 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.17 Total: 3.67 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 5.23 Total: 5.23 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.30 Total: -97.40 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.07 Total: -31.14 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -1.30 Total: 4.91 kcal Atomic # 35 Polarization: 1.31 SS G_CDS: -0.70 Total: 0.62 kcal Total: -70.76 3.07 -67.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709594169.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.279 kcal (2) G-P(sol) polarization free energy of solvation -70.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds