Wall clock time and date at job start Tue Mar 31 2020 12:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81398 * 109.46864 * 2 1 4 4 O 1.42100 * 110.54223 * 68.37699 * 3 2 1 5 5 O 1.42105 * 110.54394 * 291.62764 * 3 2 1 6 6 C 1.76200 * 104.45057 * 180.02562 * 3 2 1 7 7 C 1.38443 * 119.90245 * 90.00074 * 6 3 2 8 8 C 1.38278 * 120.33243 * 179.97438 * 7 6 3 9 9 C 1.38139 * 120.14073 * 0.02562 * 8 7 6 10 10 Cl 1.73595 * 120.09808 * 179.97438 * 9 8 7 11 11 C 1.39784 * 119.80175 * 359.97438 * 9 8 7 12 12 C 1.47596 * 120.16187 * 180.02562 * 11 9 8 13 13 O 1.21516 * 119.99848 * 359.72732 * 12 11 9 14 14 O 1.34740 * 119.99988 * 179.97438 * 12 11 9 15 15 C 1.34855 * 117.00056 * 180.02562 * 14 12 11 16 16 H 1.08006 * 119.99369 * 0.02562 * 15 14 12 17 17 C 1.38807 * 120.00304 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99379 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47055 * 59.99891 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46838 * 299.99438 * 19 17 15 23 23 C 1.37865 * 119.90540 * 270.26064 * 6 3 2 24 24 H 1.09005 * 109.46601 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47014 * 299.99602 * 1 2 3 26 26 H 1.09002 * 109.47329 * 60.00138 * 1 2 3 27 27 H 1.09002 * 109.47014 * 240.00398 * 2 1 3 28 28 H 1.08993 * 109.47223 * 120.00082 * 2 1 3 29 29 H 1.08003 * 119.83557 * 359.95490 * 7 6 3 30 30 H 1.08001 * 119.93294 * 179.97438 * 8 7 6 31 31 H 0.97010 * 119.99363 * 180.02562 * 18 17 15 32 32 H 1.08004 * 120.07081 * 0.03731 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2370 6 6 3.8899 1.5561 -0.0008 7 6 4.5769 1.4960 -1.2012 8 6 5.9544 1.3756 -1.2122 9 6 6.6548 1.3139 -0.0231 10 17 8.3840 1.1621 -0.0382 11 6 5.9669 1.3742 1.1923 12 6 6.7073 1.3096 2.4675 13 8 7.9174 1.1988 2.4624 14 8 6.0410 1.3685 3.6371 15 6 6.7773 1.3047 4.7651 16 1 7.8516 1.2112 4.7040 17 6 6.1547 1.3593 6.0045 18 7 4.8476 1.4736 6.0785 19 14 7.1747 1.2702 7.5669 20 1 8.1339 2.4035 7.5970 21 1 6.2784 1.3494 8.7483 22 1 7.9225 -0.0123 7.5973 23 6 4.5746 1.4904 1.1940 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0342 1.5430 -2.1338 30 1 6.4838 1.3288 -2.1524 31 1 4.4125 1.5121 6.9447 32 1 4.0362 1.5327 2.1293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731522220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:26 Heat of formation + Delta-G solvation = -119.413432 kcal Electronic energy + Delta-G solvation = -21906.311077 eV Core-core repulsion = 18179.315278 eV Total energy + Delta-G solvation = -3726.995799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.021 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74383 -38.34836 -37.10944 -36.30191 -35.93937 -35.18965 -33.36375 -32.33249 -31.34374 -31.06780 -25.81684 -24.41395 -23.82019 -22.96447 -20.88098 -18.83781 -18.04012 -17.82948 -16.70086 -16.55662 -16.13169 -15.97296 -15.25431 -14.78758 -14.76166 -14.42034 -14.25846 -14.01284 -13.57638 -13.22504 -12.89805 -12.70870 -12.53223 -12.08801 -12.05391 -11.84562 -11.77660 -11.61240 -11.57935 -11.27677 -11.07004 -10.81562 -10.55538 -10.51945 -10.50502 -9.94738 -9.12280 -9.01018 -8.87865 -8.67695 -6.54198 -4.15719 -0.04053 0.55322 0.99843 2.21013 2.77130 2.91814 3.13328 3.16451 3.17643 3.76251 3.77207 4.01598 4.03053 4.30200 4.40854 4.52869 4.72208 4.91845 4.96678 5.05965 5.22081 5.31667 5.38962 5.47653 5.63391 5.68230 5.77948 5.91872 5.97185 6.55886 6.72190 7.27711 7.82269 8.59243 8.93030 9.70102 10.62407 Molecular weight = 318.02amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.005092 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.401412 B = 5497.936202 C = 7547.230222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.610 4.610 3 S 2.498 3.502 4 O -0.923 6.923 5 O -0.939 6.939 6 C -0.673 4.673 7 C -0.007 4.007 8 C -0.144 4.144 9 C 0.051 3.949 10 Cl -0.022 7.022 11 C -0.098 4.098 12 C 0.420 3.580 13 O -0.530 6.530 14 O -0.201 6.201 15 C -0.371 4.371 16 H 0.100 0.900 17 C 0.042 3.958 18 N -0.851 5.851 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.268 1.268 23 C 0.032 3.968 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.274 0.726 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 -4.019 -14.175 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.739 4.739 3 S 2.677 3.323 4 O -0.920 6.920 5 O -0.937 6.937 6 C -0.760 4.760 7 C -0.026 4.026 8 C -0.164 4.164 9 C 0.023 3.977 10 Cl 0.008 6.992 11 C -0.101 4.101 12 C 0.267 3.733 13 O -0.427 6.427 14 O -0.108 6.108 15 C -0.447 4.447 16 H 0.118 0.882 17 C -0.164 4.164 18 N -0.487 5.487 19 Si 0.772 3.228 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.193 1.193 23 C 0.012 3.988 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.084 0.916 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.712 -3.283 -13.966 15.839 hybrid contribution 1.340 -0.759 0.727 1.703 sum -5.372 -4.042 -13.239 14.848 Atomic orbital electron populations 1.21561 0.90289 1.05207 1.03719 1.30209 1.07068 1.24256 1.12409 1.05531 0.74131 0.77777 0.74896 1.93642 1.82864 1.71621 1.43895 1.93553 1.83323 1.72062 1.44736 1.30604 1.26268 1.19981 0.99115 1.20943 0.93872 0.91049 0.96775 1.21063 0.94212 1.04281 0.96843 1.21360 0.86996 0.95697 0.93626 1.98422 1.07300 1.94799 1.98703 1.19384 0.93418 1.05448 0.91830 1.20330 0.86291 0.81864 0.84766 1.90730 1.14251 1.50260 1.87502 1.83866 1.39924 1.74197 1.12825 1.21310 0.92323 1.50805 0.80246 0.88241 1.25427 0.96265 0.96038 0.98678 1.69974 1.08250 1.43981 1.26449 0.85676 0.78806 0.79482 0.78870 1.19307 1.20208 1.19343 1.21417 0.93074 0.86364 0.97901 0.89768 0.90545 0.90899 0.84689 0.84125 0.83235 0.83668 0.91589 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.92 37.16 0.37 -0.74 16 2 C -0.61 -4.96 6.70 37.16 0.25 -4.71 16 3 S 2.50 30.77 5.15 -107.50 -0.55 30.22 16 4 O -0.92 -15.27 17.12 -57.54 -0.99 -16.26 16 5 O -0.94 -12.84 17.11 -57.54 -0.98 -13.83 16 6 C -0.67 -9.48 5.65 -39.64 -0.22 -9.71 16 7 C -0.01 -0.09 9.46 -39.49 -0.37 -0.46 16 8 C -0.14 -1.89 9.82 -39.60 -0.39 -2.28 16 9 C 0.05 0.88 6.35 -39.04 -0.25 0.63 16 10 Cl -0.02 -0.38 26.03 -51.86 -1.35 -1.73 16 11 C -0.10 -1.96 5.88 -104.95 -0.62 -2.58 16 12 C 0.42 10.50 7.83 34.55 0.27 10.77 16 13 O -0.53 -13.90 13.22 -19.28 -0.25 -14.16 16 14 O -0.20 -5.64 8.99 -21.67 -0.19 -5.84 16 15 C -0.37 -10.68 9.65 30.94 0.30 -10.38 16 16 H 0.10 2.86 6.86 -52.48 -0.36 2.50 16 17 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 18 N -0.85 -24.15 13.67 55.49 0.76 -23.39 16 19 Si 0.95 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C 0.03 0.57 9.03 -39.17 -0.35 0.21 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.13 0.75 8.14 -51.92 -0.42 0.32 16 28 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.15 1.32 7.56 -52.48 -0.40 0.92 16 30 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.17 3.17 7.12 -52.48 -0.37 2.80 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -35.88 316.57 -7.73 -43.61 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -2.80 Total: -0.90 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.11 Total: -18.20 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.76 Total: -23.39 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -2.42 Total: -50.08 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 30.77 SS G_CDS: -0.55 Total: 30.22 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.35 Total: -1.73 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.88 -7.73 -43.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731522220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.800 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds