Wall clock time and date at job start Tue Mar 31 2020 12:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81398 * 109.46864 * 2 1 4 4 O 1.42100 * 110.54223 * 68.37699 * 3 2 1 5 5 O 1.42105 * 110.54394 * 291.62764 * 3 2 1 6 6 C 1.76200 * 104.45057 * 180.02562 * 3 2 1 7 7 C 1.38443 * 119.90245 * 90.00074 * 6 3 2 8 8 C 1.38278 * 120.33243 * 179.97438 * 7 6 3 9 9 C 1.38139 * 120.14073 * 0.02562 * 8 7 6 10 10 Cl 1.73595 * 120.09808 * 179.97438 * 9 8 7 11 11 C 1.39784 * 119.80175 * 359.97438 * 9 8 7 12 12 C 1.47596 * 120.16187 * 180.02562 * 11 9 8 13 13 O 1.21516 * 119.99848 * 359.72732 * 12 11 9 14 14 O 1.34740 * 119.99988 * 179.97438 * 12 11 9 15 15 C 1.34855 * 117.00056 * 180.02562 * 14 12 11 16 16 H 1.08006 * 119.99369 * 0.02562 * 15 14 12 17 17 C 1.38807 * 120.00304 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99379 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47055 * 59.99891 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46838 * 299.99438 * 19 17 15 23 23 C 1.37865 * 119.90540 * 270.26064 * 6 3 2 24 24 H 1.09005 * 109.46601 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47014 * 299.99602 * 1 2 3 26 26 H 1.09002 * 109.47329 * 60.00138 * 1 2 3 27 27 H 1.09002 * 109.47014 * 240.00398 * 2 1 3 28 28 H 1.08993 * 109.47223 * 120.00082 * 2 1 3 29 29 H 1.08003 * 119.83557 * 359.95490 * 7 6 3 30 30 H 1.08001 * 119.93294 * 179.97438 * 8 7 6 31 31 H 0.97010 * 119.99363 * 180.02562 * 18 17 15 32 32 H 1.08004 * 120.07081 * 0.03731 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8384 2.3439 -1.2370 6 6 3.8899 1.5561 -0.0008 7 6 4.5769 1.4960 -1.2012 8 6 5.9544 1.3756 -1.2122 9 6 6.6548 1.3139 -0.0231 10 17 8.3840 1.1621 -0.0382 11 6 5.9669 1.3742 1.1923 12 6 6.7073 1.3096 2.4675 13 8 7.9174 1.1988 2.4624 14 8 6.0410 1.3685 3.6371 15 6 6.7773 1.3047 4.7651 16 1 7.8516 1.2112 4.7040 17 6 6.1547 1.3593 6.0045 18 7 4.8476 1.4736 6.0785 19 14 7.1747 1.2702 7.5669 20 1 8.1339 2.4035 7.5970 21 1 6.2784 1.3494 8.7483 22 1 7.9225 -0.0123 7.5973 23 6 4.5746 1.4904 1.1940 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 4.0342 1.5430 -2.1338 30 1 6.4838 1.3288 -2.1524 31 1 4.4125 1.5121 6.9447 32 1 4.0362 1.5327 2.1293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731522220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:26 Heat of formation + Delta-G solvation = -145.304628 kcal Electronic energy + Delta-G solvation = -21907.433804 eV Core-core repulsion = 18179.315278 eV Total energy + Delta-G solvation = -3728.118526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.021 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41280 -39.97901 -38.19418 -37.68051 -37.18919 -37.02844 -34.38264 -34.00445 -32.73229 -32.32858 -27.80158 -25.42953 -25.13695 -24.12669 -22.48030 -20.00489 -19.92500 -19.40621 -18.13871 -17.75286 -17.23724 -17.15128 -16.70019 -16.61339 -16.44459 -16.03003 -15.30401 -15.13176 -14.74010 -14.52840 -14.15088 -13.90461 -13.68665 -13.37257 -13.20631 -13.18827 -13.16536 -12.95405 -12.85991 -12.47510 -12.41077 -12.34090 -12.15862 -12.13280 -11.97450 -11.42909 -10.76244 -10.74265 -10.40096 -10.32065 -8.58657 -6.35821 -1.00844 -0.71786 -0.31252 0.87078 1.31460 1.32660 1.49080 1.55610 1.80633 2.03388 2.26865 2.53852 2.88224 2.98148 3.08081 3.45184 3.75051 3.78701 3.83455 4.01795 4.11280 4.36532 4.44979 4.57456 4.65576 4.69406 4.79543 4.90189 4.95822 5.13381 5.18582 5.37937 5.76633 6.54299 6.84777 7.65757 8.61187 Molecular weight = 318.02amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.005092 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.401412 B = 5497.936202 C = 7547.230222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.580 4.580 3 S 2.498 3.502 4 O -0.977 6.977 5 O -0.951 6.951 6 C -0.669 4.669 7 C 0.019 3.981 8 C -0.127 4.127 9 C 0.044 3.956 10 Cl -0.031 7.031 11 C -0.138 4.138 12 C 0.422 3.578 13 O -0.548 6.548 14 O -0.232 6.232 15 C -0.417 4.417 16 H 0.086 0.914 17 C -0.002 4.002 18 N -0.895 5.895 19 Si 1.020 2.980 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.259 1.259 23 C 0.022 3.978 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.176 0.824 28 H 0.148 0.852 29 H 0.201 0.799 30 H 0.192 0.808 31 H 0.281 0.719 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 -5.201 -16.931 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.714 4.714 3 S 2.680 3.320 4 O -0.975 6.975 5 O -0.948 6.948 6 C -0.753 4.753 7 C 0.001 3.999 8 C -0.146 4.146 9 C 0.016 3.984 10 Cl -0.002 7.002 11 C -0.140 4.140 12 C 0.271 3.729 13 O -0.446 6.446 14 O -0.141 6.141 15 C -0.493 4.493 16 H 0.104 0.896 17 C -0.204 4.204 18 N -0.531 5.531 19 Si 0.838 3.162 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.184 1.184 23 C 0.002 3.998 24 H 0.128 0.872 25 H 0.086 0.914 26 H 0.104 0.896 27 H 0.194 0.806 28 H 0.166 0.834 29 H 0.218 0.782 30 H 0.209 0.791 31 H 0.091 0.909 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.644 -4.422 -16.752 18.936 hybrid contribution 1.512 -0.437 1.237 2.002 sum -6.132 -4.858 -15.514 17.375 Atomic orbital electron populations 1.21791 0.89357 1.06953 1.04140 1.30025 1.07625 1.18833 1.14934 1.05616 0.73017 0.79912 0.73489 1.93585 1.83070 1.74769 1.46052 1.93528 1.82780 1.74116 1.44388 1.30923 1.27564 1.18441 0.98346 1.21641 0.93663 0.86912 0.97689 1.21604 0.94586 1.01606 0.96773 1.21618 0.86739 0.96118 0.93925 1.98416 1.08144 1.94899 1.98692 1.19223 0.94336 1.10080 0.90403 1.21343 0.86602 0.79279 0.85712 1.90679 1.15326 1.50472 1.88115 1.83901 1.40554 1.75943 1.13660 1.21480 0.92100 1.54174 0.81507 0.89583 1.26598 0.97596 0.94546 1.01617 1.70066 1.09969 1.45290 1.27762 0.84661 0.77340 0.79819 0.74377 1.18742 1.18235 1.18364 1.21176 0.92245 0.87603 0.98738 0.87168 0.91405 0.89570 0.80602 0.83352 0.78249 0.79133 0.90906 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.92 71.98 0.71 -1.14 16 2 C -0.58 -7.28 6.70 71.98 0.48 -6.80 16 3 S 2.50 57.21 5.15 -56.49 -0.29 56.92 16 4 O -0.98 -33.28 17.12 -127.65 -2.19 -35.46 16 5 O -0.95 -23.13 17.11 -127.65 -2.18 -25.31 16 6 C -0.67 -17.63 5.65 22.23 0.13 -17.50 16 7 C 0.02 0.39 9.46 22.33 0.21 0.60 16 8 C -0.13 -2.80 9.82 22.26 0.22 -2.58 16 9 C 0.04 1.45 6.35 22.62 0.14 1.60 16 10 Cl -0.03 -1.08 26.03 -2.72 -0.07 -1.15 16 11 C -0.14 -5.71 5.88 -20.08 -0.12 -5.82 16 12 C 0.42 22.42 7.83 70.29 0.55 22.97 16 13 O -0.55 -30.31 13.22 19.78 0.26 -30.05 16 14 O -0.23 -14.02 8.99 11.25 0.10 -13.92 16 15 C -0.42 -25.57 9.65 67.96 0.66 -24.91 16 16 H 0.09 5.30 6.86 -2.91 -0.02 5.28 16 17 C 0.00 -0.13 5.49 84.89 0.47 0.34 16 18 N -0.89 -53.10 13.67 21.63 0.30 -52.81 16 19 Si 1.02 43.57 29.55 68.60 2.03 45.60 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 C 0.02 0.80 9.03 22.54 0.20 1.00 16 24 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.18 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.20 2.10 7.56 -2.91 -0.02 2.08 16 30 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.28 15.14 8.31 -92.70 -0.77 14.37 16 32 H 0.14 5.86 7.12 -2.91 -0.02 5.84 16 Total: -1.00 -85.60 316.57 2.77 -82.82 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.17 Total: 5.61 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.65 Total: -32.26 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.30 Total: -52.81 kcal Atomic # 8 Polarization: -100.73 SS G_CDS: -4.01 Total: -104.74 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 57.21 SS G_CDS: -0.29 Total: 56.92 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.07 Total: -1.15 kcal Total: -85.60 2.77 -82.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731522220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.481 kcal (2) G-P(sol) polarization free energy of solvation -85.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds