Wall clock time and date at job start Tue Mar 31 2020 12:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48499 * 109.47132 * 239.99845 * 3 2 1 5 5 H 1.48494 * 109.47401 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47258 * 120.00029 * 3 2 1 7 7 C 1.37878 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46975 * 180.02562 * 9 7 2 11 11 O 1.45207 * 109.47110 * 179.97438 * 10 9 7 12 12 C 1.34226 * 116.99991 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00134 * 180.02562 * 12 11 10 15 15 O 1.42894 * 109.47241 * 180.02562 * 14 12 11 16 16 C 1.35905 * 116.99735 * 179.97438 * 15 14 12 17 17 C 1.38717 * 120.04369 * 359.73114 * 16 15 14 18 18 C 1.38262 * 119.95812 * 180.29386 * 17 16 15 19 19 Cl 1.73601 * 119.98006 * 179.97438 * 18 17 16 20 20 C 1.38372 * 120.04106 * 359.97438 * 18 17 16 21 21 C 1.38359 * 120.08371 * 359.97438 * 20 18 17 22 22 Cl 1.73599 * 119.97647 * 179.97438 * 21 20 18 23 23 C 1.38260 * 120.04588 * 0.02562 * 21 20 18 24 24 H 0.97001 * 120.00010 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46955 * 59.99904 * 9 7 2 26 26 H 1.09005 * 109.46942 * 300.00283 * 9 7 2 27 27 H 1.09003 * 109.47289 * 60.00382 * 10 9 7 28 28 H 1.08997 * 109.47591 * 300.00158 * 10 9 7 29 29 H 1.08998 * 109.47294 * 59.99911 * 14 12 11 30 30 H 1.09002 * 109.46898 * 300.00150 * 14 12 11 31 31 H 1.07999 * 120.01876 * 0.24223 * 17 16 15 32 32 H 1.08000 * 119.95684 * 179.97438 * 20 18 17 33 33 H 1.08003 * 120.02482 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 8 1.5194 -4.9195 0.0045 12 6 2.2505 -6.0452 0.0050 13 8 3.4572 -5.9819 0.0046 14 6 1.5665 -7.3880 0.0062 15 8 2.5507 -8.4239 0.0072 16 6 2.0976 -9.7053 0.0089 17 6 0.7340 -9.9598 0.0153 18 6 0.2752 -11.2640 0.0231 19 17 -1.4312 -11.5832 0.0317 20 6 1.1752 -12.3151 0.0242 21 6 2.5356 -12.0632 0.0168 22 17 3.6623 -13.3839 0.0188 23 6 2.9984 -10.7603 0.0089 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5574 -0.8880 26 1 0.6247 -2.5562 0.8920 27 1 2.8720 -3.6034 0.8927 28 1 2.8721 -3.6050 -0.8872 29 1 0.9434 -7.4791 -0.8834 30 1 0.9440 -7.4778 0.8965 31 1 0.0313 -9.1397 0.0149 32 1 0.8152 -13.3333 0.0307 33 1 4.0604 -10.5641 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745600847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:28 Heat of formation + Delta-G solvation = -118.349288 kcal Electronic energy + Delta-G solvation = -20310.098287 eV Core-core repulsion = 16581.104926 eV Total energy + Delta-G solvation = -3728.993361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95225 -39.95526 -38.31131 -37.24537 -36.54460 -36.12437 -33.43466 -31.49785 -30.89836 -30.41961 -28.76428 -25.09096 -23.49243 -23.10362 -21.35475 -20.67855 -19.13335 -17.57998 -17.07991 -16.99832 -16.61693 -16.21368 -15.75595 -15.64193 -15.56281 -14.79830 -14.54965 -14.24699 -13.81843 -13.33745 -12.81900 -12.77195 -12.71106 -12.41231 -12.11875 -11.94957 -11.63180 -11.41479 -11.32816 -11.14961 -10.99099 -10.81775 -10.77304 -10.36205 -9.77512 -9.72254 -9.38634 -9.31932 -8.87637 -8.49776 -6.15945 -4.20870 0.40772 0.62511 1.23640 1.72852 2.11710 2.28964 2.90400 3.26924 3.30949 3.32488 3.41268 4.26248 4.33468 4.41864 4.44332 4.52006 4.68617 4.70135 4.86781 4.92127 5.20775 5.43495 5.51266 5.56388 5.74152 5.94764 5.97680 6.51827 6.68211 6.77251 7.46724 7.53164 7.78536 7.99012 8.16317 8.84246 9.43940 10.95397 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.023966 B = 0.002075 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.023788 B =13491.418484 C =14633.681713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.352 6.352 12 C 0.458 3.542 13 O -0.493 6.493 14 C 0.063 3.937 15 O -0.282 6.282 16 C 0.164 3.836 17 C -0.200 4.200 18 C 0.018 3.982 19 Cl -0.050 7.050 20 C -0.142 4.142 21 C 0.015 3.985 22 Cl -0.047 7.047 23 C -0.137 4.137 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 -27.551 0.042 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.268 6.268 12 C 0.299 3.701 13 O -0.381 6.381 14 C -0.013 4.013 15 O -0.195 6.195 16 C 0.117 3.883 17 C -0.219 4.219 18 C -0.010 4.010 19 Cl -0.021 7.021 20 C -0.161 4.161 21 C -0.012 4.012 22 Cl -0.018 7.018 23 C -0.156 4.156 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.232 -27.410 0.043 27.411 hybrid contribution 0.245 0.869 0.000 0.903 sum 0.476 -26.541 0.043 26.545 Atomic orbital electron populations 1.69955 1.06103 1.27214 1.49497 1.24981 0.94937 0.99426 0.94756 0.86511 0.79479 0.82364 0.78832 1.20029 1.21094 1.20023 1.20919 0.93177 0.90002 1.52597 0.92232 1.19189 0.94172 0.88847 0.99010 1.23781 0.96522 0.77881 1.01347 1.86487 1.42219 1.15425 1.82697 1.22581 0.86526 0.86670 0.74310 1.90696 1.15363 1.87958 1.44042 1.22078 0.90162 0.83324 1.05773 1.86145 1.34081 1.11287 1.87961 1.18525 0.91104 0.84097 0.94605 1.21298 0.94998 0.97108 1.08540 1.20403 0.85774 0.93406 1.01382 1.98410 1.11229 1.95836 1.96600 1.20800 0.90363 0.99818 1.05163 1.20312 0.90167 0.88807 1.01939 1.98405 1.60711 1.46074 1.96648 1.20329 1.01176 0.88535 1.05551 0.92577 0.95226 0.95239 0.91950 0.91940 0.87220 0.87230 0.83214 0.83580 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 10 C 0.08 1.63 5.40 37.15 0.20 1.83 16 11 O -0.35 -6.46 10.22 -39.25 -0.40 -6.86 16 12 C 0.46 7.39 8.03 36.00 0.29 7.68 16 13 O -0.49 -9.57 16.25 -25.48 -0.41 -9.98 16 14 C 0.06 0.68 5.33 36.00 0.19 0.87 16 15 O -0.28 -3.38 9.67 -39.40 -0.38 -3.76 16 16 C 0.16 1.60 6.69 -39.22 -0.26 1.34 16 17 C -0.20 -1.68 8.82 -39.40 -0.35 -2.03 16 18 C 0.02 0.14 6.32 -39.52 -0.25 -0.11 16 19 Cl -0.05 -0.38 28.95 -51.86 -1.50 -1.88 16 20 C -0.14 -1.08 9.61 -39.49 -0.38 -1.46 16 21 C 0.01 0.12 6.32 -39.53 -0.25 -0.13 16 22 Cl -0.05 -0.36 28.95 -51.86 -1.50 -1.86 16 23 C -0.14 -1.24 9.77 -39.39 -0.38 -1.63 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 29 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 30 H 0.11 0.90 7.65 -51.93 -0.40 0.50 16 31 H 0.15 1.02 6.30 -52.49 -0.33 0.69 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -30.77 330.73 -8.45 -39.22 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -3.20 Total: -4.42 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.75 Total: -6.37 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.08 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.20 Total: -20.60 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -3.00 Total: -3.74 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.77 -8.45 -39.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745600847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.129 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds