Wall clock time and date at job start Tue Mar 31 2020 12:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48499 * 109.47132 * 239.99845 * 3 2 1 5 5 H 1.48494 * 109.47401 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47258 * 120.00029 * 3 2 1 7 7 C 1.37878 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46975 * 180.02562 * 9 7 2 11 11 O 1.45207 * 109.47110 * 179.97438 * 10 9 7 12 12 C 1.34226 * 116.99991 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00144 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00134 * 180.02562 * 12 11 10 15 15 O 1.42894 * 109.47241 * 180.02562 * 14 12 11 16 16 C 1.35905 * 116.99735 * 179.97438 * 15 14 12 17 17 C 1.38717 * 120.04369 * 359.73114 * 16 15 14 18 18 C 1.38262 * 119.95812 * 180.29386 * 17 16 15 19 19 Cl 1.73601 * 119.98006 * 179.97438 * 18 17 16 20 20 C 1.38372 * 120.04106 * 359.97438 * 18 17 16 21 21 C 1.38359 * 120.08371 * 359.97438 * 20 18 17 22 22 Cl 1.73599 * 119.97647 * 179.97438 * 21 20 18 23 23 C 1.38260 * 120.04588 * 0.02562 * 21 20 18 24 24 H 0.97001 * 120.00010 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46955 * 59.99904 * 9 7 2 26 26 H 1.09005 * 109.46942 * 300.00283 * 9 7 2 27 27 H 1.09003 * 109.47289 * 60.00382 * 10 9 7 28 28 H 1.08997 * 109.47591 * 300.00158 * 10 9 7 29 29 H 1.08998 * 109.47294 * 59.99911 * 14 12 11 30 30 H 1.09002 * 109.46898 * 300.00150 * 14 12 11 31 31 H 1.07999 * 120.01876 * 0.24223 * 17 16 15 32 32 H 1.08000 * 119.95684 * 179.97438 * 20 18 17 33 33 H 1.08003 * 120.02482 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 8 1.5194 -4.9195 0.0045 12 6 2.2505 -6.0452 0.0050 13 8 3.4572 -5.9819 0.0046 14 6 1.5665 -7.3880 0.0062 15 8 2.5507 -8.4239 0.0072 16 6 2.0976 -9.7053 0.0089 17 6 0.7340 -9.9598 0.0153 18 6 0.2752 -11.2640 0.0231 19 17 -1.4312 -11.5832 0.0317 20 6 1.1752 -12.3151 0.0242 21 6 2.5356 -12.0632 0.0168 22 17 3.6623 -13.3839 0.0188 23 6 2.9984 -10.7603 0.0089 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5574 -0.8880 26 1 0.6247 -2.5562 0.8920 27 1 2.8720 -3.6034 0.8927 28 1 2.8721 -3.6050 -0.8872 29 1 0.9434 -7.4791 -0.8834 30 1 0.9440 -7.4778 0.8965 31 1 0.0313 -9.1397 0.0149 32 1 0.8152 -13.3333 0.0307 33 1 4.0604 -10.5641 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745600847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:27 Heat of formation + Delta-G solvation = -133.964938 kcal Electronic energy + Delta-G solvation = -20310.775433 eV Core-core repulsion = 16581.104926 eV Total energy + Delta-G solvation = -3729.670506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89714 -41.11384 -39.09378 -37.85233 -37.72564 -37.05470 -35.46661 -32.59541 -32.03193 -31.45804 -29.78799 -26.97369 -24.28002 -23.88984 -23.02204 -22.06096 -19.91674 -18.95614 -18.25368 -18.11931 -17.96712 -17.23721 -16.90022 -16.82122 -16.49408 -16.25061 -15.44237 -15.21699 -14.84273 -14.65313 -14.37325 -14.08150 -13.42132 -13.32510 -13.22842 -13.06647 -12.84012 -12.70954 -12.58881 -12.55306 -12.25146 -12.01543 -11.89113 -11.65517 -11.55298 -11.52004 -11.37568 -10.60697 -9.94693 -9.55688 -8.27260 -6.40155 -0.23148 -0.02712 0.58439 1.00316 1.00805 1.19586 1.42566 1.44777 1.53183 2.25510 2.32592 2.45715 3.07476 3.42024 3.66296 3.84187 3.85157 3.90022 3.93963 3.98504 4.21091 4.21153 4.22788 4.67464 4.77543 4.89823 4.92492 5.09652 5.20651 5.46682 5.47579 5.72922 5.94499 6.06204 6.59509 6.73367 7.29581 8.84850 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.023966 B = 0.002075 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.023788 B =13491.418484 C =14633.681713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.091 3.909 11 O -0.355 6.355 12 C 0.458 3.542 13 O -0.530 6.530 14 C 0.070 3.930 15 O -0.306 6.306 16 C 0.151 3.849 17 C -0.195 4.195 18 C 0.012 3.988 19 Cl -0.045 7.045 20 C -0.136 4.136 21 C 0.012 3.988 22 Cl -0.043 7.043 23 C -0.144 4.144 24 H 0.268 0.732 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 -28.372 0.046 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.589 4.589 8 H 0.083 0.917 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.271 6.271 12 C 0.301 3.699 13 O -0.419 6.419 14 C -0.005 4.005 15 O -0.220 6.220 16 C 0.105 3.895 17 C -0.215 4.215 18 C -0.015 4.015 19 Cl -0.016 7.016 20 C -0.155 4.155 21 C -0.016 4.016 22 Cl -0.014 7.014 23 C -0.164 4.164 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.116 -28.264 0.047 28.265 hybrid contribution 0.253 0.978 -0.001 1.010 sum 0.369 -27.286 0.046 27.289 Atomic orbital electron populations 1.70072 1.07717 1.28347 1.50272 1.25927 0.95837 1.03299 0.94114 0.85408 0.78219 0.77611 0.79278 1.19130 1.20535 1.19121 1.21342 0.93717 0.91263 1.52623 0.91730 1.18991 0.94344 0.90317 0.97021 1.23254 0.95147 0.78428 1.01326 1.86460 1.42153 1.15383 1.83153 1.23600 0.86283 0.87515 0.72516 1.90682 1.17104 1.88349 1.45756 1.22224 0.89416 0.80026 1.08814 1.86087 1.35005 1.12189 1.88695 1.18560 0.91814 0.83190 0.95978 1.21448 0.94610 0.97823 1.07591 1.20471 0.86113 0.93463 1.01466 1.98416 1.10763 1.95802 1.96572 1.21009 0.90042 1.00623 1.03867 1.20333 0.90549 0.88627 1.02047 1.98408 1.60646 1.45704 1.96624 1.20433 1.01308 0.88943 1.05673 0.92315 0.97170 0.97184 0.91950 0.91937 0.84000 0.84014 0.81533 0.82017 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.53 9.11 25.60 0.23 -30.30 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C 0.09 3.91 5.40 71.98 0.39 4.30 16 11 O -0.35 -12.89 10.22 -51.38 -0.53 -13.42 16 12 C 0.46 14.36 8.03 71.24 0.57 14.94 16 13 O -0.53 -20.52 16.25 28.38 0.46 -20.05 16 14 C 0.07 1.37 5.33 71.24 0.38 1.75 16 15 O -0.31 -6.92 9.67 -73.41 -0.71 -7.63 16 16 C 0.15 2.72 6.69 22.50 0.15 2.87 16 17 C -0.20 -2.83 8.82 22.39 0.20 -2.63 16 18 C 0.01 0.17 6.32 22.31 0.14 0.31 16 19 Cl -0.04 -0.59 28.95 -2.72 -0.08 -0.67 16 20 C -0.14 -1.81 9.61 22.33 0.21 -1.60 16 21 C 0.01 0.18 6.32 22.30 0.14 0.32 16 22 Cl -0.04 -0.60 28.95 -2.72 -0.08 -0.68 16 23 C -0.14 -2.49 9.77 22.39 0.22 -2.27 16 24 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.01 0.53 8.14 -2.38 -0.02 0.52 16 27 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 28 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 29 H 0.14 1.88 7.67 -2.39 -0.02 1.86 16 30 H 0.14 1.88 7.65 -2.39 -0.02 1.86 16 31 H 0.17 1.74 6.30 -2.91 -0.02 1.72 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -66.42 330.73 5.79 -60.64 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.15 Total: 0.58 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.26 Total: -9.71 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.28 Total: -53.95 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.77 Total: -41.10 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.16 Total: -1.35 kcal Total: -66.42 5.79 -60.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745600847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.328 kcal (2) G-P(sol) polarization free energy of solvation -66.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds