Wall clock time and date at job start Tue Mar 31 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00062 * 2 1 4 4 H 1.48496 * 109.46997 * 240.00015 * 3 2 1 5 5 H 1.48502 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46818 * 120.00353 * 3 2 1 7 7 C 1.37880 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.52989 * 109.47119 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47461 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00383 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00072 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99944 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47358 * 305.00153 * 14 12 11 16 16 O 1.42903 * 109.47131 * 184.99793 * 14 12 11 17 17 C 1.50707 * 109.47163 * 65.00596 * 14 12 11 18 18 C 1.38213 * 119.98918 * 84.72339 * 17 14 12 19 19 C 1.38363 * 120.01252 * 179.72951 * 18 17 14 20 20 Cl 1.73600 * 120.00435 * 180.27167 * 19 18 17 21 21 C 1.38327 * 119.98608 * 0.52496 * 19 18 17 22 22 C 1.38332 * 119.97340 * 359.74491 * 21 19 18 23 23 Cl 1.73599 * 120.00751 * 180.02562 * 22 21 19 24 24 C 1.38223 * 119.98114 * 264.99722 * 17 14 12 25 25 H 0.96999 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47044 * 59.99455 * 9 7 2 27 27 H 1.08999 * 109.46752 * 300.00144 * 9 7 2 28 28 H 1.09005 * 109.47591 * 59.99811 * 10 9 7 29 29 H 1.08999 * 109.47443 * 299.99742 * 10 9 7 30 30 H 0.96700 * 114.00311 * 300.00591 * 16 14 12 31 31 H 1.08008 * 119.99132 * 359.97438 * 18 17 14 32 32 H 1.07999 * 120.01129 * 179.77278 * 21 19 18 33 33 H 1.07991 * 119.99598 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 8 1.5192 -4.9196 -0.0033 12 6 2.2502 -6.0453 -0.0047 13 8 3.4568 -5.9821 -0.0051 14 6 1.5660 -7.3880 -0.0047 15 1 0.8767 -7.4446 0.8378 16 8 2.5457 -8.4219 0.1109 17 6 0.8016 -7.5623 -1.2918 18 6 1.4465 -8.0328 -2.4201 19 6 0.7439 -8.1983 -3.6005 20 17 1.5525 -8.7961 -5.0156 21 6 -0.6018 -7.8824 -3.6542 22 6 -1.2454 -7.4062 -2.5261 23 17 -2.9343 -7.0100 -2.5923 24 6 -0.5429 -7.2460 -1.3449 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6240 -2.5574 0.8880 28 1 2.8719 -3.6052 0.8873 29 1 2.8718 -3.6036 -0.8927 30 1 3.1937 -8.4318 -0.6067 31 1 2.4982 -8.2752 -2.3792 32 1 -1.1497 -8.0079 -4.5763 33 1 -1.0454 -6.8746 -0.4641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756750009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:54 Heat of formation + Delta-G solvation = -135.526434 kcal Electronic energy + Delta-G solvation = -21315.275150 eV Core-core repulsion = 17585.536933 eV Total energy + Delta-G solvation = -3729.738218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81354 -39.57130 -37.47354 -37.05513 -36.49255 -35.85274 -33.42656 -32.18461 -31.00436 -30.37765 -27.80201 -25.01052 -23.22003 -22.83656 -21.32292 -20.70354 -18.46590 -18.04188 -17.00966 -16.61407 -16.32119 -16.00189 -15.86153 -15.31681 -14.79830 -14.57308 -14.25355 -14.23565 -13.45182 -13.17894 -12.65558 -12.62754 -12.43067 -12.36399 -12.08614 -11.71215 -11.47019 -11.32930 -11.24711 -11.13885 -11.07341 -10.80912 -10.74452 -10.29071 -9.75706 -9.70508 -9.38525 -9.19184 -9.07944 -8.48148 -6.14241 -4.19140 0.56747 0.62209 1.48228 1.94487 2.24107 2.77784 3.07788 3.27511 3.31854 3.34967 3.92855 3.99045 4.35108 4.49379 4.59944 4.64417 4.74031 4.95435 5.00421 5.17482 5.22390 5.58908 5.69112 5.80700 5.95783 5.98888 6.07033 6.54238 6.78167 7.02472 7.47949 7.55512 7.78950 7.97755 8.18234 8.85856 9.45582 10.97031 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.003451 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.439328 B = 8110.552653 C = 8943.843323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.074 3.926 11 O -0.349 6.349 12 C 0.430 3.570 13 O -0.504 6.504 14 C 0.164 3.836 15 H 0.152 0.848 16 O -0.522 6.522 17 C -0.094 4.094 18 C -0.094 4.094 19 C -0.021 4.021 20 Cl -0.055 7.055 21 C -0.096 4.096 22 C -0.020 4.020 23 Cl -0.049 7.049 24 C -0.074 4.074 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.385 0.615 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -20.001 -6.369 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.002 3.998 11 O -0.265 6.265 12 C 0.271 3.729 13 O -0.393 6.393 14 C 0.103 3.897 15 H 0.169 0.831 16 O -0.329 6.329 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.048 4.048 20 Cl -0.026 7.026 21 C -0.115 4.115 22 C -0.047 4.047 23 Cl -0.020 7.020 24 C -0.093 4.093 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.235 0.765 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.703 -19.957 -5.971 21.006 hybrid contribution 0.814 1.214 -0.701 1.621 sum -1.889 -18.744 -6.672 19.985 Atomic orbital electron populations 1.69959 1.06078 1.27162 1.49483 1.24969 0.94912 0.99355 0.94756 0.86535 0.79511 0.82476 0.78810 1.20056 1.21070 1.20038 1.20922 0.93129 0.90084 1.52606 0.92325 1.19163 0.94121 0.88893 0.98926 1.23731 0.96503 0.78480 1.01063 1.86529 1.42305 1.15720 1.81930 1.24189 0.87108 0.88075 0.73501 1.90668 1.15401 1.87916 1.45276 1.20269 0.89487 0.83070 0.96859 0.83105 1.86690 1.43447 1.49639 1.53102 1.19961 0.94120 1.00431 0.95003 1.20845 1.00682 0.99092 0.90672 1.20574 0.92662 1.02480 0.89111 1.98396 1.79091 1.86304 1.38770 1.20964 0.92859 0.98991 0.98700 1.20680 0.86947 1.02245 0.94810 1.98410 1.12668 1.92285 1.98597 1.21031 0.93040 0.97263 0.97967 0.92605 0.95329 0.95275 0.92095 0.92234 0.76516 0.84237 0.83529 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.66 5.35 -27.89 -0.15 0.52 16 10 C 0.07 1.60 5.40 37.15 0.20 1.80 16 11 O -0.35 -6.47 10.21 -39.25 -0.40 -6.87 16 12 C 0.43 6.86 7.26 36.00 0.26 7.12 16 13 O -0.50 -9.25 16.07 -25.46 -0.41 -9.66 16 14 C 0.16 1.88 3.73 -29.03 -0.11 1.77 16 15 H 0.15 1.40 8.05 -51.93 -0.42 0.99 16 16 O -0.52 -5.72 12.79 -55.14 -0.71 -6.43 16 17 C -0.09 -1.02 4.98 -104.63 -0.52 -1.54 16 18 C -0.09 -0.95 9.11 -39.54 -0.36 -1.31 16 19 C -0.02 -0.21 6.32 -39.50 -0.25 -0.46 16 20 Cl -0.05 -0.51 28.96 -51.86 -1.50 -2.01 16 21 C -0.10 -0.94 9.62 -39.51 -0.38 -1.32 16 22 C -0.02 -0.21 6.32 -39.50 -0.25 -0.46 16 23 Cl -0.05 -0.51 28.96 -51.86 -1.50 -2.01 16 24 C -0.07 -0.80 9.46 -39.54 -0.37 -1.17 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 29 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.38 3.31 7.14 45.56 0.33 3.64 16 31 H 0.14 1.17 6.62 -52.48 -0.35 0.82 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -31.12 329.79 -8.69 -39.81 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -2.52 Total: -0.38 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.34 Total: -8.36 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.74 Total: -25.19 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -1.52 Total: -22.96 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -3.00 Total: -4.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.12 -8.69 -39.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756750009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.718 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds