Wall clock time and date at job start Tue Mar 31 2020 12:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00062 * 2 1 4 4 H 1.48496 * 109.46997 * 240.00015 * 3 2 1 5 5 H 1.48502 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46818 * 120.00353 * 3 2 1 7 7 C 1.37880 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.52989 * 109.47119 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47461 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00383 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00072 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99944 * 179.97438 * 12 11 10 15 15 H 1.08999 * 109.47358 * 305.00153 * 14 12 11 16 16 O 1.42903 * 109.47131 * 184.99793 * 14 12 11 17 17 C 1.50707 * 109.47163 * 65.00596 * 14 12 11 18 18 C 1.38213 * 119.98918 * 84.72339 * 17 14 12 19 19 C 1.38363 * 120.01252 * 179.72951 * 18 17 14 20 20 Cl 1.73600 * 120.00435 * 180.27167 * 19 18 17 21 21 C 1.38327 * 119.98608 * 0.52496 * 19 18 17 22 22 C 1.38332 * 119.97340 * 359.74491 * 21 19 18 23 23 Cl 1.73599 * 120.00751 * 180.02562 * 22 21 19 24 24 C 1.38223 * 119.98114 * 264.99722 * 17 14 12 25 25 H 0.96999 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47044 * 59.99455 * 9 7 2 27 27 H 1.08999 * 109.46752 * 300.00144 * 9 7 2 28 28 H 1.09005 * 109.47591 * 59.99811 * 10 9 7 29 29 H 1.08999 * 109.47443 * 299.99742 * 10 9 7 30 30 H 0.96700 * 114.00311 * 300.00591 * 16 14 12 31 31 H 1.08008 * 119.99132 * 359.97438 * 18 17 14 32 32 H 1.07999 * 120.01129 * 179.77278 * 21 19 18 33 33 H 1.07991 * 119.99598 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 8 1.5192 -4.9196 -0.0033 12 6 2.2502 -6.0453 -0.0047 13 8 3.4568 -5.9821 -0.0051 14 6 1.5660 -7.3880 -0.0047 15 1 0.8767 -7.4446 0.8378 16 8 2.5457 -8.4219 0.1109 17 6 0.8016 -7.5623 -1.2918 18 6 1.4465 -8.0328 -2.4201 19 6 0.7439 -8.1983 -3.6005 20 17 1.5525 -8.7961 -5.0156 21 6 -0.6018 -7.8824 -3.6542 22 6 -1.2454 -7.4062 -2.5261 23 17 -2.9343 -7.0100 -2.5923 24 6 -0.5429 -7.2460 -1.3449 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8920 27 1 0.6240 -2.5574 0.8880 28 1 2.8719 -3.6052 0.8873 29 1 2.8718 -3.6036 -0.8927 30 1 3.1937 -8.4318 -0.6067 31 1 2.4982 -8.2752 -2.3792 32 1 -1.1497 -8.0079 -4.5763 33 1 -1.0454 -6.8746 -0.4641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756750009.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:53 Heat of formation + Delta-G solvation = -152.994999 kcal Electronic energy + Delta-G solvation = -21316.032644 eV Core-core repulsion = 17585.536933 eV Total energy + Delta-G solvation = -3730.495712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97251 -40.59032 -38.54088 -37.83231 -37.54042 -36.95613 -35.46428 -33.12323 -32.24427 -31.79520 -28.88756 -26.88505 -24.01765 -23.94505 -22.96248 -22.05778 -19.44929 -19.26458 -18.41205 -18.05906 -17.65424 -17.14700 -16.93924 -16.57215 -16.21093 -15.65631 -15.31833 -15.11250 -14.78209 -14.63874 -14.36818 -13.62766 -13.40854 -13.30581 -13.15215 -13.07342 -12.89390 -12.71223 -12.59753 -12.55558 -12.28889 -12.02705 -11.95653 -11.79224 -11.51519 -11.50717 -11.22197 -10.60580 -10.06312 -9.87468 -8.26824 -6.39981 -0.25133 -0.17781 0.68753 0.97986 1.15409 1.40475 1.44209 1.50468 1.57381 2.20291 2.39825 3.06776 3.07807 3.11866 3.57707 3.75588 3.80877 3.86623 3.96710 4.19298 4.21331 4.22282 4.35635 4.67938 4.81027 4.91351 4.99146 5.20375 5.28356 5.46693 5.47807 5.72743 6.05918 6.23827 6.58143 6.73376 7.29857 8.85165 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.003451 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.439328 B = 8110.552653 C = 8943.843323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.090 3.910 11 O -0.354 6.354 12 C 0.429 3.571 13 O -0.528 6.528 14 C 0.180 3.820 15 H 0.176 0.824 16 O -0.523 6.523 17 C -0.102 4.102 18 C -0.096 4.096 19 C -0.028 4.028 20 Cl -0.048 7.048 21 C -0.094 4.094 22 C -0.030 4.030 23 Cl -0.050 7.050 24 C -0.081 4.081 25 H 0.268 0.732 26 H 0.006 0.994 27 H 0.009 0.991 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.395 0.605 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 -20.448 -6.618 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.017 3.983 11 O -0.270 6.270 12 C 0.272 3.728 13 O -0.418 6.418 14 C 0.119 3.881 15 H 0.193 0.807 16 O -0.331 6.331 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.055 4.055 20 Cl -0.019 7.019 21 C -0.113 4.113 22 C -0.057 4.057 23 Cl -0.021 7.021 24 C -0.099 4.099 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.247 0.753 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.990 -20.436 -6.227 21.456 hybrid contribution 0.585 1.247 -0.666 1.530 sum -1.405 -19.188 -6.893 20.437 Atomic orbital electron populations 1.70079 1.07721 1.28295 1.50211 1.25906 0.95792 1.03216 0.94060 0.85435 0.78262 0.77708 0.79278 1.19162 1.20506 1.19074 1.21343 0.93669 0.91320 1.52714 0.91796 1.18953 0.94274 0.90428 0.96782 1.23196 0.95104 0.79009 1.00989 1.86517 1.42383 1.15622 1.82514 1.25192 0.87010 0.88523 0.72028 1.90655 1.16598 1.88201 1.46335 1.20318 0.89396 0.80142 0.98231 0.80731 1.86692 1.43742 1.48776 1.53854 1.19888 0.94131 1.01419 0.94903 1.21078 1.01522 0.98417 0.90453 1.20653 0.92817 1.02634 0.89419 1.98399 1.78940 1.86195 1.38338 1.21169 0.92972 0.98078 0.99070 1.20762 0.87004 1.02820 0.95132 1.98408 1.12780 1.92345 1.98606 1.21203 0.93229 0.97043 0.98450 0.92353 0.97545 0.97278 0.92050 0.92314 0.75329 0.82691 0.82095 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.45 13.29 21.45 0.28 -54.17 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.06 3.40 7.74 -2.92 -0.02 3.38 16 9 C 0.03 1.71 5.35 29.85 0.16 1.87 16 10 C 0.09 3.88 5.40 71.98 0.39 4.27 16 11 O -0.35 -13.02 10.21 -51.39 -0.52 -13.54 16 12 C 0.43 13.24 7.26 71.23 0.52 13.76 16 13 O -0.53 -18.89 16.07 28.38 0.46 -18.43 16 14 C 0.18 3.79 3.73 29.10 0.11 3.90 16 15 H 0.18 2.84 8.05 -2.39 -0.02 2.82 16 16 O -0.52 -10.32 12.79 -129.95 -1.66 -11.98 16 17 C -0.10 -2.05 4.98 -19.87 -0.10 -2.15 16 18 C -0.10 -1.79 9.11 22.29 0.20 -1.58 16 19 C -0.03 -0.52 6.32 22.32 0.14 -0.38 16 20 Cl -0.05 -0.81 28.96 -2.72 -0.08 -0.89 16 21 C -0.09 -1.72 9.62 22.31 0.21 -1.51 16 22 C -0.03 -0.61 6.32 22.32 0.14 -0.47 16 23 Cl -0.05 -1.01 28.96 -2.72 -0.08 -1.09 16 24 C -0.08 -1.63 9.46 22.30 0.21 -1.42 16 25 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 2.62 8.13 -2.38 -0.02 2.60 16 29 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 30 H 0.39 5.97 7.14 -74.06 -0.53 5.44 16 31 H 0.16 2.28 6.62 -2.91 -0.02 2.26 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.16 2.85 8.06 -2.92 -0.02 2.83 16 Total: -1.00 -65.77 329.79 3.74 -62.03 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.64 Total: 6.31 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 2.68 Total: -13.25 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.28 Total: -54.17 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.73 Total: -43.95 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.16 Total: -1.99 kcal Total: -65.77 3.74 -62.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756750009.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.969 kcal (2) G-P(sol) polarization free energy of solvation -65.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds