Wall clock time and date at job start Tue Mar 31 2020 11:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 119.99876 * 9 7 5 12 12 H 1.48494 * 109.47457 * 240.00237 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21702 * 119.99699 * 359.97438 * 14 13 3 16 16 C 1.46556 * 120.00018 * 179.97438 * 14 13 3 17 17 S 1.76213 * 126.17646 * 0.02562 * 16 14 13 18 18 C 1.70922 * 90.38337 * 180.02562 * 17 16 14 19 19 N 1.29351 * 110.61032 * 0.02562 * 18 17 16 20 20 C 1.31020 * 117.45995 * 359.70242 * 19 18 17 21 21 Br 1.89101 * 123.05537 * 180.30824 * 20 19 18 22 22 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 23 23 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 25 25 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 26 26 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 27 27 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 29 29 H 1.08004 * 124.69182 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6099 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3419 2.6326 0.4308 16 6 0.0472 3.3193 2.6193 17 16 1.0382 3.4606 4.0695 18 6 -0.2191 4.3067 4.8601 19 7 -1.2411 4.4385 4.0782 20 6 -1.1480 3.9350 2.8722 21 35 -2.5413 4.0445 1.5984 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8295 -0.0613 -2.9496 28 1 2.2719 2.1231 1.9978 29 1 -0.1676 4.6789 5.8726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762723789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:23 Heat of formation + Delta-G solvation = 12.796693 kcal Electronic energy + Delta-G solvation = -16708.896729 eV Core-core repulsion = 13805.499056 eV Total energy + Delta-G solvation = -2903.397673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00123 -38.73599 -35.15036 -32.53272 -31.83524 -31.10237 -29.50894 -27.09347 -25.83285 -23.26570 -21.74417 -19.64224 -19.61434 -18.80618 -17.15238 -15.92599 -15.56470 -15.27151 -14.90584 -14.22727 -14.07058 -14.02321 -13.25893 -12.74203 -12.15775 -11.87460 -11.59708 -11.30865 -11.01681 -10.93930 -10.87456 -10.43592 -10.30353 -10.21939 -10.04776 -9.70691 -9.59666 -9.13897 -9.03654 -8.87501 -8.56146 -7.95313 -6.17676 -4.27487 0.09150 0.80240 1.24019 1.89349 2.26247 3.20585 3.28721 3.30832 3.60585 3.79075 4.25814 4.34170 4.83351 5.14090 5.33151 5.44550 6.36173 6.42637 6.61606 6.99442 7.12967 7.21682 7.24573 7.33559 7.54858 7.64254 7.82433 8.10876 8.47989 8.67133 8.91597 9.39495 10.87646 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.004748 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.024918 B = 5896.318619 C = 6761.956009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.696 5.696 14 C 0.568 3.432 15 O -0.504 6.504 16 C -0.237 4.237 17 S 0.205 5.795 18 C 0.018 3.982 19 N -0.455 5.455 20 C 0.109 3.891 21 Br 0.051 6.949 22 H 0.052 0.948 23 H 0.024 0.976 24 H 0.037 0.963 25 H 0.101 0.899 26 H 0.031 0.969 27 H 0.265 0.735 28 H 0.385 0.615 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 6.351 13.222 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.345 5.345 14 C 0.350 3.650 15 O -0.382 6.382 16 C -0.365 4.365 17 S 0.458 5.542 18 C -0.279 4.279 19 N -0.169 5.169 20 C -0.109 4.109 21 Br 0.134 6.866 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.120 0.880 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.218 0.782 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.432 6.230 12.412 15.751 hybrid contribution 0.905 0.079 0.164 0.923 sum -6.527 6.309 12.576 15.510 Atomic orbital electron populations 1.21850 0.98186 0.98247 1.01302 1.21950 0.92728 0.99526 1.02456 1.18903 0.94481 0.89276 0.80309 0.92782 1.21229 0.90472 1.39300 1.06470 0.91994 1.24871 0.98673 0.94691 0.95315 1.69897 1.35099 1.37407 1.09301 0.86394 0.84741 0.77814 0.78169 1.19714 1.20838 1.20841 1.46498 1.13552 1.55481 1.18930 1.16620 0.83765 0.79827 0.84778 1.90902 1.50778 1.58732 1.37745 1.26434 0.98307 1.10137 1.01624 1.84077 1.18190 1.48459 1.03445 1.28611 0.92139 1.02516 1.04621 1.65953 1.28404 1.20150 1.02421 1.22352 0.94540 1.00763 0.93202 1.96831 1.42760 1.97227 1.49803 0.92925 0.95714 0.94375 0.88049 0.94969 0.92523 0.78231 0.77416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 15 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 15 3 C 0.27 6.58 2.24 -69.08 -0.15 6.43 15 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 15 5 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 15 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 15 8 N -0.88 -23.96 11.29 55.43 0.63 -23.34 15 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 15 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 13 N -0.70 -14.09 5.02 -56.28 -0.28 -14.37 15 14 C 0.57 11.22 6.35 -12.91 -0.08 11.14 15 15 O -0.50 -11.23 11.93 5.19 0.06 -11.16 15 16 C -0.24 -3.84 6.52 -36.75 -0.24 -4.08 15 17 S 0.20 2.29 22.35 -107.50 -2.40 -0.12 15 18 C 0.02 0.18 12.21 51.72 0.63 0.82 15 19 N -0.46 -6.37 10.50 -13.52 -0.14 -6.51 15 20 C 0.11 1.75 7.29 -18.42 -0.13 1.61 15 21 Br 0.05 0.82 31.85 -68.01 -2.17 -1.35 15 22 H 0.05 1.21 7.84 -51.93 -0.41 0.81 15 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.04 0.81 5.64 -51.93 -0.29 0.52 15 25 H 0.10 2.65 5.95 -51.93 -0.31 2.34 15 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 28 H 0.39 6.83 7.72 -40.82 -0.32 6.51 15 29 H 0.21 1.16 8.06 -52.48 -0.42 0.74 15 LS Contribution 281.51 15.07 4.24 4.24 Total: -1.00 -29.32 281.51 -7.81 -37.13 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -2.53 Total: 2.68 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.20 Total: -2.26 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.20 Total: -44.22 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.06 Total: -11.16 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.40 Total: -0.12 kcal Atomic # 35 Polarization: 0.82 SS G_CDS: -2.17 Total: -1.35 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.32 -7.81 -37.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762723789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.927 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds