Wall clock time and date at job start Tue Mar 31 2020 11:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 119.99876 * 9 7 5 12 12 H 1.48494 * 109.47457 * 240.00237 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21702 * 119.99699 * 359.97438 * 14 13 3 16 16 C 1.46556 * 120.00018 * 179.97438 * 14 13 3 17 17 S 1.76213 * 126.17646 * 0.02562 * 16 14 13 18 18 C 1.70922 * 90.38337 * 180.02562 * 17 16 14 19 19 N 1.29351 * 110.61032 * 0.02562 * 18 17 16 20 20 C 1.31020 * 117.45995 * 359.70242 * 19 18 17 21 21 Br 1.89101 * 123.05537 * 180.30824 * 20 19 18 22 22 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 23 23 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 25 25 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 26 26 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 27 27 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 28 28 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 29 29 H 1.08004 * 124.69182 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6099 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3419 2.6326 0.4308 16 6 0.0472 3.3193 2.6193 17 16 1.0382 3.4606 4.0695 18 6 -0.2191 4.3067 4.8601 19 7 -1.2411 4.4385 4.0782 20 6 -1.1480 3.9350 2.8722 21 35 -2.5413 4.0445 1.5984 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8295 -0.0613 -2.9496 28 1 2.2719 2.1231 1.9978 29 1 -0.1676 4.6789 5.8726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762723789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:22 Heat of formation + Delta-G solvation = -7.443273 kcal Electronic energy + Delta-G solvation = -16709.774400 eV Core-core repulsion = 13805.499056 eV Total energy + Delta-G solvation = -2904.275344 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22642 -40.16943 -36.94129 -34.35967 -33.18652 -32.70718 -30.81274 -28.90008 -26.93331 -25.09252 -23.24044 -21.41308 -20.91384 -20.03546 -18.65819 -17.53718 -17.16488 -16.62038 -16.50303 -15.71803 -15.45115 -15.05953 -14.77673 -14.59081 -13.88260 -13.48696 -13.17757 -13.00266 -12.80057 -12.70020 -12.16275 -12.08207 -12.05818 -11.66762 -11.50867 -11.07083 -11.04431 -10.71713 -10.58563 -10.47164 -9.95764 -9.67510 -8.15236 -6.32379 -0.98027 -0.27171 0.30559 0.78188 1.20347 1.45686 1.47431 1.58495 2.12938 2.26542 2.50261 3.14921 3.37484 3.74624 3.98259 4.51245 4.54669 4.58685 4.77138 5.07863 5.27588 5.43937 5.50386 5.59950 5.78258 5.88523 6.16336 6.21966 6.72983 6.83307 7.28156 7.44035 8.90239 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.004748 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.024918 B = 5896.318619 C = 6761.956009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.696 5.696 14 C 0.569 3.431 15 O -0.539 6.539 16 C -0.287 4.287 17 S 0.275 5.725 18 C 0.047 3.953 19 N -0.483 5.483 20 C 0.111 3.889 21 Br 0.032 6.968 22 H 0.029 0.971 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.398 0.602 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 6.897 16.233 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.345 5.345 14 C 0.353 3.647 15 O -0.419 6.419 16 C -0.416 4.416 17 S 0.530 5.470 18 C -0.249 4.249 19 N -0.197 5.197 20 C -0.108 4.108 21 Br 0.115 6.885 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.233 0.767 29 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -6.120 6.785 15.475 17.972 hybrid contribution 0.495 -0.023 -0.630 0.801 sum -5.626 6.763 14.845 17.256 Atomic orbital electron populations 1.21680 0.96953 0.99170 1.00314 1.21796 0.93719 0.98963 1.01482 1.18464 0.93880 0.89216 0.80649 0.97587 1.21570 0.91190 1.39065 1.06807 0.90945 1.25723 1.03151 0.94341 0.95006 1.70046 1.36952 1.38227 1.09837 0.85349 0.79294 0.77795 0.78223 1.18299 1.20525 1.21190 1.46191 1.14406 1.55877 1.18064 1.16968 0.82870 0.79066 0.85779 1.90874 1.51556 1.59818 1.39627 1.26018 1.00314 1.12540 1.02706 1.83826 1.16337 1.47085 0.99710 1.29576 0.90387 0.99247 1.05658 1.66023 1.30042 1.21646 1.01990 1.22390 0.93991 1.00556 0.93865 1.96798 1.43501 1.97201 1.50958 0.95173 0.93677 0.94059 0.90712 0.93999 0.92588 0.76696 0.72226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 15 2 C -0.12 -5.80 5.45 30.59 0.17 -5.63 15 3 C 0.28 13.97 2.24 44.24 0.10 14.07 15 4 H 0.01 0.37 7.58 -2.39 -0.02 0.35 15 5 C -0.55 -28.06 8.73 25.60 0.22 -27.84 15 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 15 7 C 0.02 0.95 5.29 84.66 0.45 1.40 15 8 N -0.91 -50.95 11.29 21.45 0.24 -50.71 15 9 Si 0.97 40.93 29.54 68.60 2.03 42.96 15 10 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 11 H -0.28 -11.61 7.11 99.48 0.71 -10.91 15 12 H -0.29 -12.16 7.11 99.48 0.71 -11.45 15 13 N -0.70 -28.20 5.02 -450.18 -2.26 -30.46 15 14 C 0.57 22.67 6.35 86.41 0.55 23.21 15 15 O -0.54 -24.91 11.93 -4.35 -0.05 -24.97 15 16 C -0.29 -9.00 6.52 24.10 0.16 -8.84 15 17 S 0.28 5.16 22.35 -56.49 -1.26 3.89 15 18 C 0.05 0.74 12.21 130.61 1.59 2.33 15 19 N -0.48 -12.19 10.50 -196.69 -2.07 -14.25 15 20 C 0.11 3.45 7.29 84.48 0.62 4.07 15 21 Br 0.03 1.05 31.85 -20.37 -0.65 0.40 15 22 H 0.03 1.44 7.84 -2.38 -0.02 1.42 15 23 H 0.04 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.04 1.78 5.64 -2.39 -0.01 1.77 15 25 H 0.07 4.03 5.95 -2.38 -0.01 4.01 15 26 H 0.04 1.88 8.14 -2.39 -0.02 1.87 15 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 15 28 H 0.40 13.67 7.72 -92.71 -0.72 12.96 15 29 H 0.26 1.16 8.06 -2.91 -0.02 1.13 15 Total: -1.00 -66.18 281.51 0.93 -65.24 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.48 Total: 10.00 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 4.47 Total: -2.11 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -4.08 Total: -95.42 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -1.26 Total: 3.89 kcal Atomic # 35 Polarization: 1.05 SS G_CDS: -0.65 Total: 0.40 kcal Total: -66.18 0.93 -65.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762723789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.801 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds