Wall clock time and date at job start Tue Mar 31 2020 12:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47225 * 270.00429 * 3 2 1 5 5 H 1.48504 * 109.46853 * 29.99690 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00033 * 3 2 1 7 7 C 1.38946 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99743 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00438 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00308 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99891 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99962 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34682 * 116.99919 * 180.02562 * 13 12 10 15 15 O 1.21433 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.48065 * 120.00131 * 180.26979 * 14 13 12 17 17 C 1.39262 * 119.71437 * 179.71961 * 16 14 13 18 18 C 1.38785 * 119.06888 * 180.02562 * 17 16 14 19 19 Cl 1.73598 * 120.76014 * 180.02562 * 18 17 16 20 20 C 1.38703 * 118.47932 * 0.02562 * 18 17 16 21 21 C 1.38690 * 119.33053 * 359.97438 * 20 18 17 22 22 Cl 1.73601 * 119.54986 * 180.02562 * 21 20 18 23 23 N 1.31623 * 120.89433 * 359.73128 * 21 20 18 24 24 H 0.96994 * 120.00087 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99844 * 359.97438 * 9 7 2 26 26 H 1.08992 * 109.47022 * 60.00016 * 12 10 9 27 27 H 1.09004 * 109.46840 * 299.99418 * 12 10 9 28 28 H 1.07997 * 120.46424 * 0.02562 * 17 16 14 29 29 H 1.08003 * 120.33109 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 8 6.0448 -3.7393 -0.0006 14 6 7.3800 -3.9158 -0.0002 15 8 8.1197 -2.9527 0.0003 16 6 7.9460 -5.2840 -0.0068 17 6 9.3275 -5.4595 -0.0122 18 6 9.8435 -6.7478 -0.0189 19 17 11.5585 -7.0173 -0.0251 20 6 8.9577 -7.8151 -0.0205 21 6 7.5934 -7.5657 -0.0149 22 17 6.4796 -8.8972 -0.0162 23 7 7.1318 -6.3331 -0.0027 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3632 0.0004 26 1 5.9241 -1.8565 0.8899 27 1 5.9241 -1.8566 -0.8901 28 1 9.9880 -4.6050 -0.0112 29 1 9.3267 -8.8301 -0.0253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762944073.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:12 Heat of formation + Delta-G solvation = -80.654702 kcal Electronic energy + Delta-G solvation = -20492.820391 eV Core-core repulsion = 16661.921246 eV Total energy + Delta-G solvation = -3830.899144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 318.001 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29988 -40.03208 -38.32804 -37.50896 -37.05121 -36.39048 -34.05251 -33.09142 -32.04995 -31.78042 -28.81302 -25.85761 -24.37776 -24.15187 -21.70934 -19.66101 -18.85661 -18.59729 -17.97723 -16.80288 -16.68177 -16.61172 -16.02592 -15.46776 -15.28326 -14.93490 -14.85582 -14.15964 -13.78963 -13.21547 -13.16445 -12.92816 -12.59399 -12.32032 -12.20258 -11.96064 -11.88202 -11.64659 -11.26325 -11.13034 -10.65214 -10.62254 -10.32236 -10.23422 -10.03620 -9.73206 -9.66169 -8.65513 -8.27830 -6.37634 -3.90545 -0.23720 0.22088 0.95002 1.42801 1.93528 2.25071 2.99200 3.03440 3.04096 3.12618 3.56359 3.64865 3.99562 4.00772 4.04934 4.31361 4.45878 4.66025 4.82268 5.08301 5.11295 5.26002 5.47162 5.50356 5.66147 6.20903 6.84288 7.43032 7.55791 8.02194 8.49220 8.85488 9.31177 9.66987 10.74696 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.002752 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.005539 B =10171.495263 C =11446.329357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.123 0.877 9 N -0.580 5.580 10 C 0.447 3.553 11 O -0.550 6.550 12 C 0.054 3.946 13 O -0.294 6.294 14 C 0.522 3.478 15 O -0.494 6.494 16 C 0.137 3.863 17 C -0.099 4.099 18 C 0.008 3.992 19 Cl -0.025 7.025 20 C -0.120 4.120 21 C 0.186 3.814 22 Cl 0.000 7.000 23 N -0.414 5.414 24 H 0.275 0.725 25 H 0.373 0.627 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.171 0.829 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.909 -13.139 -0.074 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.232 3.768 11 O -0.431 6.431 12 C -0.023 4.023 13 O -0.206 6.206 14 C 0.364 3.636 15 O -0.382 6.382 16 C -0.001 4.001 17 C -0.120 4.120 18 C -0.027 4.027 19 Cl 0.005 6.995 20 C -0.142 4.142 21 C 0.018 3.982 22 Cl 0.028 6.972 23 N -0.128 5.128 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.188 0.812 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 22.599 -13.386 -0.063 26.266 hybrid contribution 1.482 1.248 0.014 1.937 sum 24.081 -12.138 -0.049 26.967 Atomic orbital electron populations 1.69614 1.05650 1.27729 1.48444 1.25030 0.95507 0.98026 0.97308 0.86682 0.79852 0.83903 0.79067 1.19420 1.19969 1.19364 1.19430 0.78635 0.96905 1.48606 0.85976 1.42013 1.07620 1.05610 1.66754 1.19116 0.86751 0.85236 0.85693 1.90641 1.68842 1.30599 1.53051 1.22919 0.95653 0.79837 1.03911 1.86743 1.20934 1.31297 1.81652 1.20473 0.82043 0.87564 0.73568 1.90873 1.60958 1.40625 1.45715 1.19877 0.88908 0.90516 1.00781 1.22092 0.95127 0.97706 0.97036 1.20972 0.87319 0.93559 1.00817 1.98437 1.08188 1.96533 1.96388 1.22064 0.91147 1.01196 0.99777 1.21587 0.88384 0.89327 0.98854 1.98462 1.62504 1.40048 1.96152 1.67131 1.39711 0.97755 1.08180 0.91405 0.79418 0.88997 0.88995 0.81154 0.81687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.96 55.50 0.77 -24.39 15 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 15 3 Si 0.88 18.95 27.74 -169.99 -4.71 14.24 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.27 -5.94 7.11 56.52 0.40 -5.53 15 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 15 7 C -0.31 -8.61 10.16 -14.94 -0.15 -8.76 15 8 H 0.12 3.91 7.39 -52.48 -0.39 3.52 15 9 N -0.58 -13.70 5.09 -10.96 -0.06 -13.75 15 10 C 0.45 10.37 7.86 -10.99 -0.09 10.29 15 11 O -0.55 -15.33 16.08 -14.11 -0.23 -15.56 15 12 C 0.05 0.96 5.95 36.01 0.21 1.17 15 13 O -0.29 -5.40 9.57 -47.12 -0.45 -5.85 15 14 C 0.52 7.95 7.95 34.76 0.28 8.22 15 15 O -0.49 -7.54 16.11 -19.21 -0.31 -7.85 15 16 C 0.14 1.76 6.75 -83.04 -0.56 1.20 15 17 C -0.10 -0.93 9.45 -39.00 -0.37 -1.30 15 18 C 0.01 0.06 6.37 -39.21 -0.25 -0.19 15 19 Cl -0.02 -0.16 29.02 -51.86 -1.50 -1.66 15 20 C -0.12 -0.92 9.70 -39.24 -0.38 -1.30 15 21 C 0.19 2.00 7.27 -17.47 -0.13 1.88 15 22 Cl 0.00 0.00 29.10 -51.86 -1.51 -1.51 15 23 N -0.41 -5.76 10.10 -6.96 -0.07 -5.83 15 24 H 0.28 7.29 8.31 -40.82 -0.34 6.95 15 25 H 0.37 7.60 5.76 -40.82 -0.24 7.37 15 26 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 28 H 0.17 1.36 7.64 -52.49 -0.40 0.96 15 29 H 0.17 0.76 8.06 -52.48 -0.42 0.34 15 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -33.41 307.88 -6.42 -39.83 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -1.46 Total: 5.37 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -1.53 Total: 12.33 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.65 Total: -43.98 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.99 Total: -29.25 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.24 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -3.01 Total: -3.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.41 -6.42 -39.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762944073.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.823 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds