Wall clock time and date at job start Tue Mar 31 2020 12:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47225 * 270.00429 * 3 2 1 5 5 H 1.48504 * 109.46853 * 29.99690 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00033 * 3 2 1 7 7 C 1.38946 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99743 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00438 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00308 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99891 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99962 * 179.97438 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34682 * 116.99919 * 180.02562 * 13 12 10 15 15 O 1.21433 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.48065 * 120.00131 * 180.26979 * 14 13 12 17 17 C 1.39262 * 119.71437 * 179.71961 * 16 14 13 18 18 C 1.38785 * 119.06888 * 180.02562 * 17 16 14 19 19 Cl 1.73598 * 120.76014 * 180.02562 * 18 17 16 20 20 C 1.38703 * 118.47932 * 0.02562 * 18 17 16 21 21 C 1.38690 * 119.33053 * 359.97438 * 20 18 17 22 22 Cl 1.73601 * 119.54986 * 180.02562 * 21 20 18 23 23 N 1.31623 * 120.89433 * 359.73128 * 21 20 18 24 24 H 0.96994 * 120.00087 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99844 * 359.97438 * 9 7 2 26 26 H 1.08992 * 109.47022 * 60.00016 * 12 10 9 27 27 H 1.09004 * 109.46840 * 299.99418 * 12 10 9 28 28 H 1.07997 * 120.46424 * 0.02562 * 17 16 14 29 29 H 1.08003 * 120.33109 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 8 6.0448 -3.7393 -0.0006 14 6 7.3800 -3.9158 -0.0002 15 8 8.1197 -2.9527 0.0003 16 6 7.9460 -5.2840 -0.0068 17 6 9.3275 -5.4595 -0.0122 18 6 9.8435 -6.7478 -0.0189 19 17 11.5585 -7.0173 -0.0251 20 6 8.9577 -7.8151 -0.0205 21 6 7.5934 -7.5657 -0.0149 22 17 6.4796 -8.8972 -0.0162 23 7 7.1318 -6.3331 -0.0027 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3632 0.0004 26 1 5.9241 -1.8565 0.8899 27 1 5.9241 -1.8566 -0.8901 28 1 9.9880 -4.6050 -0.0112 29 1 9.3267 -8.8301 -0.0253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762944073.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:11 Heat of formation + Delta-G solvation = -104.077470 kcal Electronic energy + Delta-G solvation = -20493.836078 eV Core-core repulsion = 16661.921246 eV Total energy + Delta-G solvation = -3831.914832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 318.001 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.26506 -41.15535 -40.12580 -38.14536 -37.85297 -37.65029 -36.09135 -33.89926 -33.82839 -32.86633 -30.33804 -27.10009 -25.97590 -24.98844 -22.78441 -21.55855 -20.54904 -19.87496 -18.90804 -17.92619 -17.82114 -17.80270 -17.27921 -16.89488 -16.48671 -16.29675 -15.60375 -15.60098 -15.45813 -14.76512 -14.24191 -14.08939 -13.96474 -13.80355 -13.66959 -13.00476 -12.78682 -12.60624 -12.45594 -12.35737 -12.20688 -11.99256 -11.94842 -11.58573 -11.17788 -10.90350 -10.61403 -10.51277 -10.33908 -8.45505 -6.09064 -1.04632 -0.51579 0.24049 0.70480 0.93178 1.12809 1.31018 1.34504 1.45467 1.76010 2.16429 2.21069 2.52320 3.00438 3.08732 3.26255 3.33121 3.59753 3.77472 3.90542 3.96231 4.08079 4.11908 4.43041 4.74659 4.99024 5.47088 5.85122 5.97454 6.38614 6.51600 6.77591 7.25554 7.78554 8.71281 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.002752 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.005539 B =10171.495263 C =11446.329357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.963 3.037 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.229 1.229 7 C -0.335 4.335 8 H 0.058 0.942 9 N -0.574 5.574 10 C 0.447 3.553 11 O -0.608 6.608 12 C 0.064 3.936 13 O -0.326 6.326 14 C 0.525 3.475 15 O -0.496 6.496 16 C 0.112 3.888 17 C -0.081 4.081 18 C 0.013 3.987 19 Cl -0.001 7.001 20 C -0.095 4.095 21 C 0.173 3.827 22 Cl -0.005 7.005 23 N -0.458 5.458 24 H 0.282 0.718 25 H 0.394 0.606 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.187 0.813 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.004 -12.017 -0.045 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.782 3.218 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.152 1.152 7 C -0.463 4.463 8 H 0.076 0.924 9 N -0.216 5.216 10 C 0.233 3.767 11 O -0.492 6.492 12 C -0.012 4.012 13 O -0.239 6.239 14 C 0.367 3.633 15 O -0.384 6.384 16 C -0.025 4.025 17 C -0.102 4.102 18 C -0.022 4.022 19 Cl 0.028 6.972 20 C -0.116 4.116 21 C 0.005 3.995 22 Cl 0.024 6.976 23 N -0.172 5.172 24 H 0.092 0.908 25 H 0.230 0.770 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.204 0.796 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 26.735 -12.258 -0.034 29.412 hybrid contribution 0.244 0.710 0.001 0.750 sum 26.980 -11.549 -0.032 29.348 Atomic orbital electron populations 1.69787 1.08160 1.29589 1.49049 1.26113 0.96464 1.02709 0.95481 0.85401 0.79625 0.76551 0.80220 1.17849 1.19690 1.15245 1.18998 0.80789 0.95315 1.51237 0.92364 1.41769 1.06047 1.06926 1.66883 1.20178 0.89360 0.84062 0.83052 1.90613 1.70933 1.32714 1.54949 1.22785 0.90819 0.80624 1.07018 1.86727 1.23159 1.31504 1.82531 1.20808 0.80751 0.88759 0.72951 1.90850 1.60506 1.40985 1.46058 1.19671 0.89936 0.89162 1.03708 1.22204 0.93706 0.99027 0.95284 1.20994 0.88455 0.92907 0.99870 1.98457 1.06163 1.96380 1.96173 1.22370 0.89604 1.02858 0.96731 1.21766 0.89536 0.88425 0.99735 1.98457 1.63031 1.39878 1.96243 1.66928 1.41446 0.99139 1.09702 0.90813 0.76972 0.85762 0.85672 0.79597 0.78277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 13.96 21.66 0.30 -54.81 15 2 C -0.01 -0.43 5.50 84.92 0.47 0.04 15 3 Si 0.96 37.80 27.74 68.60 1.90 39.70 15 4 H -0.25 -9.43 7.11 99.48 0.71 -8.73 15 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 6 H -0.23 -7.52 6.52 99.48 0.65 -6.87 15 7 C -0.33 -19.56 10.16 84.04 0.85 -18.71 15 8 H 0.06 4.06 7.39 -2.91 -0.02 4.04 15 9 N -0.57 -27.14 5.09 -306.99 -1.56 -28.70 15 10 C 0.45 21.01 7.86 87.66 0.69 21.70 15 11 O -0.61 -35.70 16.08 15.72 0.25 -35.44 15 12 C 0.06 2.17 5.95 71.24 0.42 2.59 15 13 O -0.33 -11.92 9.57 -49.53 -0.47 -12.39 15 14 C 0.52 15.48 7.95 70.43 0.56 16.04 15 15 O -0.50 -14.07 16.11 20.05 0.32 -13.75 15 16 C 0.11 2.77 6.75 41.85 0.28 3.06 15 17 C -0.08 -1.36 9.45 22.65 0.21 -1.14 15 18 C 0.01 0.16 6.37 22.51 0.14 0.31 15 19 Cl 0.00 -0.01 29.02 -2.72 -0.08 -0.09 15 20 C -0.09 -1.20 9.70 22.49 0.22 -0.99 15 21 C 0.17 3.57 7.27 84.83 0.62 4.19 15 22 Cl 0.00 -0.10 29.10 -2.72 -0.08 -0.17 15 23 N -0.46 -12.74 10.10 -175.95 -1.78 -14.52 15 24 H 0.28 15.26 8.31 -92.71 -0.77 14.49 15 25 H 0.39 15.06 5.76 -92.71 -0.53 14.53 15 26 H 0.12 3.39 8.14 -2.39 -0.02 3.37 15 27 H 0.13 3.40 8.14 -2.38 -0.02 3.38 15 28 H 0.19 2.44 7.64 -2.91 -0.02 2.42 15 29 H 0.20 1.08 8.06 -2.91 -0.02 1.06 15 Total: -1.00 -79.21 307.88 3.93 -75.28 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.65 Total: 17.82 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 4.47 Total: 27.08 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -3.04 Total: -98.03 kcal Atomic # 8 Polarization: -61.69 SS G_CDS: 0.10 Total: -61.58 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.70 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.16 Total: -0.26 kcal Total: -79.21 3.93 -75.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762944073.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.800 kcal (2) G-P(sol) polarization free energy of solvation -79.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds