Wall clock time and date at job start Tue Mar 31 2020 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 Cl 1.80299 * 109.47175 * 2 1 4 4 Cl 1.80298 * 109.46533 * 240.00375 * 2 1 3 5 5 C 1.50699 * 109.47248 * 120.00625 * 2 1 3 6 6 O 1.20826 * 120.00048 * 334.99400 * 5 2 1 7 7 O 1.34222 * 119.99750 * 154.99547 * 5 2 1 8 8 C 1.45206 * 116.99794 * 179.97438 * 7 5 2 9 9 C 1.50705 * 109.47089 * 180.02562 * 8 7 5 10 10 C 1.38303 * 119.92926 * 269.72838 * 9 8 7 11 11 C 1.38096 * 120.06672 * 179.72568 * 10 9 8 12 12 C 1.38883 * 119.93057 * 0.57051 * 11 10 9 13 13 O 1.35746 * 120.06682 * 179.68145 * 12 11 10 14 14 C 1.34835 * 116.99530 * 174.48501 * 13 12 11 15 15 H 1.07998 * 120.00101 * 5.06464 * 14 13 12 16 16 C 1.38651 * 119.99987 * 185.05345 * 14 13 12 17 17 N 1.31554 * 120.00527 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99862 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47369 * 89.99533 * 18 16 14 20 20 H 1.48509 * 109.47079 * 209.99833 * 18 16 14 21 21 H 1.48505 * 109.47058 * 329.99271 * 18 16 14 22 22 C 1.38877 * 119.85730 * 359.70536 * 12 11 10 23 23 C 1.38098 * 119.93747 * 359.97438 * 22 12 11 24 24 H 1.09007 * 109.46649 * 299.99608 * 1 2 3 25 25 H 1.09004 * 109.47646 * 59.99173 * 1 2 3 26 26 H 1.08993 * 109.47619 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47471 * 300.00140 * 8 7 5 28 28 H 1.08996 * 109.46725 * 60.00441 * 8 7 5 29 29 H 1.08001 * 119.96577 * 359.97438 * 10 9 8 30 30 H 1.08001 * 120.03322 * 180.27644 * 11 10 9 31 31 H 0.96993 * 120.00450 * 180.02562 * 17 16 14 32 32 H 1.08009 * 120.02807 * 179.97438 * 22 12 11 33 33 H 1.07998 * 119.96562 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 17 2.1310 1.6999 0.0000 4 17 2.1308 -0.8499 -1.4722 5 6 2.0324 -0.7105 1.2304 6 8 1.3397 -0.7704 2.2186 7 8 3.2493 -1.2768 1.2284 8 6 3.6680 -1.9437 2.4484 9 6 5.0501 -2.5141 2.2602 10 6 5.2056 -3.8027 1.7826 11 6 6.4709 -4.3263 1.6036 12 6 7.5877 -3.5617 1.9150 13 8 8.8326 -4.0759 1.7463 14 6 9.8723 -3.2439 1.9580 15 1 9.6974 -2.2441 2.3268 16 6 11.1660 -3.6722 1.7025 17 7 12.1806 -2.8607 1.9096 18 14 11.4685 -5.4015 1.0642 19 1 11.4434 -5.3926 -0.4205 20 1 12.7944 -5.8777 1.5341 21 1 10.4083 -6.3090 1.5719 22 6 7.4280 -2.2701 2.3998 23 6 6.1602 -1.7498 2.5703 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.6801 -1.2263 3.2689 28 1 2.9707 -2.7488 2.6800 29 1 4.3367 -4.3987 1.5456 30 1 6.5917 -5.3311 1.2264 31 1 13.0856 -3.1602 1.7305 32 1 8.2946 -1.6731 2.6432 33 1 6.0355 -0.7456 2.9476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777223063.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:21 Heat of formation + Delta-G solvation = -116.149404 kcal Electronic energy + Delta-G solvation = -21052.347678 eV Core-core repulsion = 17323.449711 eV Total energy + Delta-G solvation = -3728.897967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90246 -40.92361 -38.84886 -38.07478 -37.61953 -37.25407 -34.52342 -33.33234 -32.27161 -31.87677 -28.22529 -26.97733 -25.54026 -23.77906 -22.22087 -21.92771 -19.88807 -19.37235 -19.18936 -18.34000 -18.00951 -16.80790 -16.51688 -16.22351 -15.81566 -15.67318 -15.38454 -15.27421 -14.52535 -14.52254 -14.29353 -14.08702 -13.79534 -13.41310 -13.25132 -13.12575 -12.97493 -12.65306 -12.52994 -12.36545 -12.34895 -12.12683 -12.00966 -11.97091 -11.82771 -11.52818 -11.31797 -10.93346 -9.87762 -9.17077 -8.52496 -6.26020 -0.16682 0.14585 0.30603 0.51556 1.21318 1.31914 1.33853 1.39016 1.52007 2.26714 2.67771 2.89933 3.01240 3.10775 3.36866 3.77869 3.86933 4.08379 4.25423 4.29317 4.39805 4.46286 4.50877 4.70494 4.88370 4.88978 5.06792 5.16507 5.29728 5.49359 5.62572 5.74504 5.84342 6.14417 6.23826 6.81248 7.52639 8.58772 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.002736 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.776529 B =10231.711336 C =10352.379998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 Cl -0.097 7.097 4 Cl -0.100 7.100 5 C 0.466 3.534 6 O -0.486 6.486 7 O -0.340 6.340 8 C 0.126 3.874 9 C -0.175 4.175 10 C -0.039 4.039 11 C -0.194 4.194 12 C 0.134 3.866 13 O -0.238 6.238 14 C -0.402 4.402 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.241 4.241 23 C -0.046 4.046 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.136 0.864 31 H 0.286 0.714 32 H 0.112 0.888 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.887 4.044 -4.179 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.038 3.962 3 Cl -0.071 7.071 4 Cl -0.074 7.074 5 C 0.306 3.694 6 O -0.374 6.374 7 O -0.256 6.256 8 C 0.054 3.946 9 C -0.176 4.176 10 C -0.057 4.057 11 C -0.213 4.213 12 C 0.084 3.916 13 O -0.145 6.145 14 C -0.478 4.478 15 H 0.100 0.900 16 C -0.187 4.187 17 N -0.561 5.561 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.260 4.260 23 C -0.064 4.064 24 H 0.122 0.878 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.176 0.824 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.658 3.878 -4.024 26.259 hybrid contribution 1.173 -0.029 -0.027 1.174 sum -24.485 3.849 -4.051 25.114 Atomic orbital electron populations 1.22504 0.83419 1.07065 1.07353 1.26531 1.00017 0.84037 0.85601 1.98831 1.90220 1.19806 1.98217 1.98836 1.90133 1.78055 1.40328 1.22929 0.80741 0.77210 0.88535 1.90734 1.57105 1.55976 1.33608 1.86687 1.32128 1.64329 1.42423 1.21917 0.92478 0.96850 0.83326 1.19239 0.93058 0.95567 1.09704 1.20986 0.96197 0.94514 0.94033 1.20528 0.90222 1.01488 1.09023 1.19754 0.85387 0.92909 0.93526 1.83524 1.12051 1.39172 1.79790 1.20725 0.84467 0.96948 1.45684 0.89970 1.25297 0.93441 1.03567 0.96402 1.69721 0.99890 1.38076 1.48403 0.85219 0.78152 0.78265 0.79115 1.19066 1.19234 1.18428 1.21266 0.98638 0.96853 1.09261 1.20946 0.90709 0.99146 0.95620 0.87782 0.86477 0.87819 0.89430 0.88209 0.82407 0.84658 0.90460 0.87002 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.25 71.98 0.59 -0.92 16 2 C 0.09 1.56 1.55 29.85 0.05 1.60 16 3 Cl -0.10 -1.79 28.18 -2.72 -0.08 -1.87 16 4 Cl -0.10 -1.89 27.74 -2.72 -0.08 -1.96 16 5 C 0.47 9.98 6.85 71.24 0.49 10.47 16 6 O -0.49 -11.32 15.84 21.96 0.35 -10.98 16 7 O -0.34 -8.28 9.62 -51.34 -0.49 -8.77 16 8 C 0.13 2.89 5.59 71.24 0.40 3.29 16 9 C -0.17 -5.07 5.52 -19.83 -0.11 -5.18 16 10 C -0.04 -1.14 9.69 22.25 0.22 -0.92 16 11 C -0.19 -7.01 9.99 22.39 0.22 -6.79 16 12 C 0.13 6.08 6.65 22.58 0.15 6.23 16 13 O -0.24 -12.66 8.59 -22.76 -0.20 -12.85 16 14 C -0.40 -23.34 9.95 67.92 0.68 -22.66 16 15 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 16 C 0.01 0.68 5.49 84.83 0.47 1.14 16 17 N -0.92 -54.49 13.96 21.61 0.30 -54.18 16 18 Si 0.97 44.63 28.62 68.60 1.96 46.60 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.24 -10.32 9.17 22.39 0.21 -10.11 16 23 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 24 H 0.10 1.04 7.87 -2.38 -0.02 1.02 16 25 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 28 H 0.10 1.89 8.07 -2.39 -0.02 1.87 16 29 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 31 H 0.29 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.11 5.28 5.64 -2.91 -0.02 5.27 16 33 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -65.91 326.13 6.49 -59.42 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.15 Total: 9.79 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 3.57 Total: -25.19 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.30 Total: -54.18 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.34 Total: -32.60 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.96 Total: 46.60 kcal Atomic # 17 Polarization: -3.68 SS G_CDS: -0.15 Total: -3.83 kcal Total: -65.91 6.49 -59.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777223063.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.734 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds