Wall clock time and date at job start Tue Mar 31 2020 11:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46808 * 2 1 4 4 C 1.50697 * 109.47193 * 120.00071 * 2 1 3 5 5 H 1.07997 * 119.99740 * 119.99873 * 4 2 1 6 6 C 1.37877 * 120.00300 * 300.00185 * 4 2 1 7 7 N 1.31512 * 119.99566 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47661 * 89.99751 * 8 6 4 10 10 H 1.48504 * 109.47289 * 210.00011 * 8 6 4 11 11 H 1.48501 * 109.47397 * 329.99396 * 8 6 4 12 12 N 1.46504 * 109.46788 * 240.00219 * 2 1 3 13 13 C 1.46498 * 120.00134 * 299.99636 * 12 2 1 14 14 C 1.34781 * 119.99835 * 119.99990 * 12 2 1 15 15 O 1.21705 * 119.99910 * 1.40636 * 14 12 2 16 16 C 1.46559 * 119.99764 * 181.40480 * 14 12 2 17 17 S 1.76214 * 126.17844 * 351.62662 * 16 14 12 18 18 C 1.70923 * 90.38538 * 180.02562 * 17 16 14 19 19 N 1.29369 * 110.60766 * 359.97438 * 18 17 16 20 20 C 1.31017 * 117.45649 * 359.70830 * 19 18 17 21 21 Br 1.89094 * 123.05004 * 180.31019 * 20 19 18 22 22 H 1.09001 * 109.47188 * 299.99854 * 1 2 3 23 23 H 1.09003 * 109.47231 * 60.00076 * 1 2 3 24 24 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 25 25 H 0.97006 * 120.00127 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47142 * 263.65637 * 13 12 2 27 27 H 1.09003 * 109.46911 * 143.65346 * 13 12 2 28 28 H 1.09002 * 109.47084 * 23.65027 * 13 12 2 29 29 H 1.07997 * 124.69836 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1196 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5654 3.7121 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.1083 1.1219 -1.8780 16 6 3.2561 -0.7171 -3.2955 17 16 3.0766 -2.4323 -3.6573 18 6 3.8724 -2.2117 -5.1538 19 7 4.2111 -0.9731 -5.3112 20 6 3.9002 -0.1354 -4.3530 21 35 4.3110 1.7091 -4.4222 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7095 1.1617 3.4844 26 1 2.4701 -2.7349 -1.0717 27 1 1.5133 -2.2581 -2.4949 28 1 0.7464 -2.3300 -0.8901 29 1 4.0657 -2.9975 -5.8690 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777811301.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:00 Heat of formation + Delta-G solvation = 30.209201 kcal Electronic energy + Delta-G solvation = -16847.388807 eV Core-core repulsion = 13944.746197 eV Total energy + Delta-G solvation = -2902.642610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90835 -38.78402 -35.49079 -33.06695 -31.72487 -30.28578 -28.80261 -26.67175 -25.67865 -25.25843 -22.46212 -20.00095 -19.18281 -18.07160 -16.72595 -16.03794 -15.92640 -15.29512 -14.93942 -14.09172 -14.02960 -14.00021 -13.15523 -12.79727 -12.67117 -12.22897 -11.67622 -11.54042 -11.11522 -10.93171 -10.83340 -10.78366 -10.37498 -10.27090 -10.15170 -9.73926 -9.46462 -9.25096 -9.05618 -8.79239 -8.49403 -7.75435 -6.13965 -4.22604 0.17885 0.87422 1.41549 1.96137 2.36813 3.23721 3.30634 3.31346 3.57523 3.65357 4.32689 4.36398 4.89704 4.98149 5.18087 5.32393 5.53106 5.74424 6.03471 6.65959 6.71583 6.93569 7.23909 7.32551 7.40304 7.62167 7.91282 8.07427 8.31203 8.68220 8.85095 9.44031 10.91398 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.004959 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.183240 B = 5644.538450 C = 6420.858313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.260 3.740 3 H 0.069 0.931 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.581 5.581 13 C 0.074 3.926 14 C 0.569 3.431 15 O -0.509 6.509 16 C -0.243 4.243 17 S 0.238 5.762 18 C -0.018 4.018 19 N -0.459 5.459 20 C 0.111 3.889 21 Br 0.046 6.954 22 H 0.097 0.903 23 H 0.013 0.987 24 H 0.031 0.969 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -6.913 -14.381 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.087 0.913 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.072 4.072 14 C 0.353 3.647 15 O -0.386 6.386 16 C -0.371 4.371 17 S 0.493 5.507 18 C -0.314 4.314 19 N -0.173 5.173 20 C -0.106 4.106 21 Br 0.129 6.871 22 H 0.115 0.885 23 H 0.033 0.967 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.923 -6.265 -14.167 15.764 hybrid contribution 0.488 -0.260 0.616 0.828 sum 3.412 -6.525 -13.551 15.422 Atomic orbital electron populations 1.22125 0.97870 0.99502 1.01187 1.19068 0.91027 0.94646 0.79142 0.91345 1.21273 1.32161 1.13186 0.90108 0.92192 1.24878 0.94823 0.94956 0.98976 1.69871 1.36095 1.22471 1.23925 0.86473 0.78707 0.79827 0.82248 1.20551 1.21088 1.19893 1.48193 1.48300 1.11351 1.23391 1.21831 1.03124 0.83850 0.98386 1.16696 0.80233 0.86338 0.81400 1.90884 1.56697 1.15622 1.75396 1.26314 1.10990 0.97200 1.02638 1.84577 1.48586 1.04693 1.12811 1.29085 1.00920 0.96880 1.04480 1.66051 1.20529 1.01899 1.28867 1.22285 1.01445 0.95770 0.91135 1.96811 1.92884 0.98934 1.98446 0.88482 0.96749 0.95012 0.92560 0.92093 0.93029 0.88433 0.78105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.96 37.16 0.33 -3.05 15 2 C 0.26 6.39 2.63 -69.08 -0.18 6.21 15 3 H 0.07 1.95 6.90 -51.93 -0.36 1.59 15 4 C -0.53 -13.74 8.37 -34.44 -0.29 -14.03 15 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -24.31 11.32 55.43 0.63 -23.69 15 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 15 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 12 N -0.58 -12.02 2.75 -176.85 -0.49 -12.51 15 13 C 0.07 1.16 8.18 59.85 0.49 1.65 15 14 C 0.57 11.93 7.63 -12.90 -0.10 11.83 15 15 O -0.51 -12.25 14.19 5.18 0.07 -12.18 15 16 C -0.24 -4.16 6.29 -36.75 -0.23 -4.39 15 17 S 0.24 2.75 18.16 -107.50 -1.95 0.79 15 18 C -0.02 -0.20 12.21 51.73 0.63 0.43 15 19 N -0.46 -6.83 10.50 -13.52 -0.14 -6.97 15 20 C 0.11 1.89 7.28 -18.42 -0.13 1.75 15 21 Br 0.05 0.78 31.89 -68.01 -2.17 -1.39 15 22 H 0.10 2.44 6.07 -51.93 -0.32 2.13 15 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 15 24 H 0.03 0.65 6.67 -51.93 -0.35 0.31 15 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 26 H 0.06 0.89 7.88 -51.93 -0.41 0.48 15 27 H 0.05 0.68 4.48 -22.85 -0.10 0.57 15 28 H 0.10 1.51 6.44 -51.93 -0.33 1.18 15 29 H 0.20 1.33 8.06 -52.49 -0.42 0.90 15 LS Contribution 277.12 15.07 4.18 4.18 Total: -1.00 -30.53 277.12 -6.71 -37.25 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: -2.25 Total: -3.01 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 0.43 Total: 2.07 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.00 Total: -43.17 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.95 Total: 0.79 kcal Atomic # 35 Polarization: 0.78 SS G_CDS: -2.17 Total: -1.39 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.53 -6.71 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777811301.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.456 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds