Wall clock time and date at job start Tue Mar 31 2020 11:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46808 * 2 1 4 4 C 1.50697 * 109.47193 * 120.00071 * 2 1 3 5 5 H 1.07997 * 119.99740 * 119.99873 * 4 2 1 6 6 C 1.37877 * 120.00300 * 300.00185 * 4 2 1 7 7 N 1.31512 * 119.99566 * 359.97438 * 6 4 2 8 8 Si 1.86789 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47661 * 89.99751 * 8 6 4 10 10 H 1.48504 * 109.47289 * 210.00011 * 8 6 4 11 11 H 1.48501 * 109.47397 * 329.99396 * 8 6 4 12 12 N 1.46504 * 109.46788 * 240.00219 * 2 1 3 13 13 C 1.46498 * 120.00134 * 299.99636 * 12 2 1 14 14 C 1.34781 * 119.99835 * 119.99990 * 12 2 1 15 15 O 1.21705 * 119.99910 * 1.40636 * 14 12 2 16 16 C 1.46559 * 119.99764 * 181.40480 * 14 12 2 17 17 S 1.76214 * 126.17844 * 351.62662 * 16 14 12 18 18 C 1.70923 * 90.38538 * 180.02562 * 17 16 14 19 19 N 1.29369 * 110.60766 * 359.97438 * 18 17 16 20 20 C 1.31017 * 117.45649 * 359.70830 * 19 18 17 21 21 Br 1.89094 * 123.05004 * 180.31019 * 20 19 18 22 22 H 1.09001 * 109.47188 * 299.99854 * 1 2 3 23 23 H 1.09003 * 109.47231 * 60.00076 * 1 2 3 24 24 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 25 25 H 0.97006 * 120.00127 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47142 * 263.65637 * 13 12 2 27 27 H 1.09003 * 109.46911 * 143.65346 * 13 12 2 28 28 H 1.09002 * 109.47084 * 23.65027 * 13 12 2 29 29 H 1.07997 * 124.69836 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1196 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5654 3.7121 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.1083 1.1219 -1.8780 16 6 3.2561 -0.7171 -3.2955 17 16 3.0766 -2.4323 -3.6573 18 6 3.8724 -2.2117 -5.1538 19 7 4.2111 -0.9731 -5.3112 20 6 3.9002 -0.1354 -4.3530 21 35 4.3110 1.7091 -4.4222 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7095 1.1617 3.4844 26 1 2.4701 -2.7349 -1.0717 27 1 1.5133 -2.2581 -2.4949 28 1 0.7464 -2.3300 -0.8901 29 1 4.0657 -2.9975 -5.8690 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777811301.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:59 Heat of formation + Delta-G solvation = 9.220029 kcal Electronic energy + Delta-G solvation = -16848.298966 eV Core-core repulsion = 13944.746197 eV Total energy + Delta-G solvation = -2903.552769 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.978 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21116 -40.19567 -37.19729 -34.91611 -32.98742 -31.91328 -30.25074 -28.03514 -27.29556 -26.78212 -23.99103 -21.58096 -20.35173 -19.44510 -18.52271 -17.51748 -17.41681 -16.73261 -16.55933 -15.56499 -15.42382 -15.06335 -14.67021 -14.50015 -14.11746 -13.63001 -13.49293 -13.00229 -12.83700 -12.76024 -12.52443 -12.17387 -12.10397 -12.03352 -11.56307 -11.20241 -10.83397 -10.62724 -10.53270 -10.46097 -9.96085 -9.35896 -8.13680 -6.30045 -0.95460 -0.25906 0.40960 0.79370 1.24146 1.43807 1.45702 1.54788 2.06840 2.12934 2.45807 3.15194 3.31012 3.71708 3.79502 4.10782 4.50382 4.60132 4.68888 4.88700 4.92243 5.03625 5.44744 5.54329 5.64947 6.00761 6.14259 6.29160 6.62555 6.76454 7.17156 7.42179 8.90825 Molecular weight = 317.98amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.004959 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.183240 B = 5644.538450 C = 6420.858313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.265 3.735 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.285 1.285 10 H -0.282 1.282 11 H -0.258 1.258 12 N -0.589 5.589 13 C 0.068 3.932 14 C 0.563 3.437 15 O -0.558 6.558 16 C -0.295 4.295 17 S 0.322 5.678 18 C 0.008 3.992 19 N -0.487 5.487 20 C 0.111 3.889 21 Br 0.025 6.975 22 H 0.070 0.930 23 H 0.020 0.980 24 H 0.053 0.947 25 H 0.264 0.736 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -10.528 -15.529 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.033 0.967 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.212 1.212 10 H -0.207 1.207 11 H -0.182 1.182 12 N -0.320 5.320 13 C -0.076 4.076 14 C 0.349 3.651 15 O -0.438 6.438 16 C -0.423 4.423 17 S 0.579 5.421 18 C -0.286 4.286 19 N -0.201 5.201 20 C -0.108 4.108 21 Br 0.109 6.891 22 H 0.089 0.911 23 H 0.039 0.961 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.098 -9.946 -15.333 18.538 hybrid contribution 0.456 0.759 0.849 1.226 sum 3.554 -9.188 -14.484 17.517 Atomic orbital electron populations 1.21915 0.96682 1.00531 1.00184 1.18644 0.91844 0.92390 0.80707 0.96702 1.21539 1.32032 1.13203 0.90827 0.91813 1.25690 0.95005 0.95602 1.01914 1.70017 1.37185 1.23809 1.24461 0.85479 0.77628 0.79396 0.78656 1.21173 1.20715 1.18237 1.48111 1.48364 1.13190 1.22330 1.22108 1.03820 0.81073 1.00629 1.17168 0.79540 0.86049 0.82337 1.90839 1.58324 1.17874 1.76785 1.25946 1.13595 1.01182 1.01536 1.84062 1.47112 0.99176 1.11747 1.29979 0.97530 0.96480 1.04642 1.66122 1.22359 1.03096 1.28568 1.22318 1.01264 0.95550 0.91716 1.96773 1.92908 1.00963 1.98467 0.91097 0.96085 0.92805 0.92633 0.90570 0.90146 0.88069 0.72983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.96 71.98 0.64 -5.57 15 2 C 0.27 13.38 2.63 44.24 0.12 13.49 15 3 H 0.02 0.91 6.90 -2.39 -0.02 0.89 15 4 C -0.54 -28.11 8.37 25.60 0.21 -27.90 15 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 15 6 C 0.02 0.95 5.30 84.65 0.45 1.39 15 7 N -0.92 -51.57 11.32 21.45 0.24 -51.32 15 8 Si 0.96 41.83 29.54 68.60 2.03 43.85 15 9 H -0.29 -12.60 7.11 99.48 0.71 -11.89 15 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 11 H -0.26 -10.49 7.11 99.48 0.71 -9.78 15 12 N -0.59 -24.36 2.75 -831.63 -2.29 -26.65 15 13 C 0.07 1.96 8.18 127.77 1.05 3.00 15 14 C 0.56 23.98 7.63 86.41 0.66 24.64 15 15 O -0.56 -28.32 14.19 -4.36 -0.06 -28.38 15 16 C -0.29 -9.71 6.29 24.11 0.15 -9.56 15 17 S 0.32 6.06 18.16 -56.49 -1.03 5.04 15 18 C 0.01 0.13 12.21 130.61 1.59 1.73 15 19 N -0.49 -13.13 10.50 -196.69 -2.07 -15.19 15 20 C 0.11 3.67 7.28 84.48 0.62 4.28 15 21 Br 0.03 0.89 31.89 -20.37 -0.65 0.24 15 22 H 0.07 3.67 6.07 -2.39 -0.01 3.65 15 23 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 24 H 0.05 2.18 6.67 -2.39 -0.02 2.17 15 25 H 0.26 14.16 8.31 -92.70 -0.77 13.39 15 26 H 0.08 1.98 7.88 -2.39 -0.02 1.96 15 27 H 0.08 1.80 4.48 -20.88 -0.09 1.71 15 28 H 0.10 2.87 6.44 -2.39 -0.02 2.85 15 29 H 0.25 1.53 8.06 -2.91 -0.02 1.51 15 Total: -1.00 -70.44 277.12 2.78 -67.67 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: 1.11 Total: -0.76 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.49 Total: 5.51 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -4.11 Total: -93.17 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.06 Total: -28.38 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.03 Total: 5.04 kcal Atomic # 35 Polarization: 0.89 SS G_CDS: -0.65 Total: 0.24 kcal Total: -70.44 2.78 -67.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777811301.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.887 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds