Wall clock time and date at job start Tue Mar 31 2020 12:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48513 * 109.46891 * 239.99411 * 3 2 1 5 5 H 1.48499 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47487 * 119.99612 * 3 2 1 7 7 C 1.38948 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00116 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00214 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99842 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99745 * 180.02562 * 10 9 7 13 13 O 1.45207 * 109.46939 * 180.02562 * 12 10 9 14 14 C 1.34681 * 116.99956 * 180.02562 * 13 12 10 15 15 O 1.21439 * 120.00170 * 359.97438 * 14 13 12 16 16 C 1.47970 * 119.99707 * 180.02562 * 14 13 12 17 17 C 1.39862 * 120.93111 * 359.97438 * 16 14 13 18 18 C 1.38261 * 118.99825 * 179.72213 * 17 16 14 19 19 Cl 1.73598 * 119.54137 * 180.25769 * 18 17 16 20 20 N 1.31925 * 120.91362 * 0.28259 * 18 17 16 21 21 C 1.31785 * 122.06369 * 359.97438 * 20 18 17 22 22 C 1.38319 * 120.89641 * 0.02562 * 21 20 18 23 23 Cl 1.73597 * 120.50704 * 180.02562 * 22 21 20 24 24 H 0.97006 * 120.00362 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99695 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47432 * 60.00332 * 12 10 9 27 27 H 1.09002 * 109.47204 * 299.99133 * 12 10 9 28 28 H 1.08002 * 120.50259 * 0.02562 * 17 16 14 29 29 H 1.07997 * 119.54964 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2438 -4.8629 0.0010 13 8 2.1874 -5.9666 0.0030 14 6 1.6726 -7.2111 0.0022 15 8 0.4687 -7.3702 0.0004 16 6 2.5740 -8.3845 0.0046 17 6 3.9634 -8.2238 0.0072 18 6 4.7682 -9.3480 0.0154 19 17 6.4944 -9.1648 0.0255 20 7 4.2424 -10.5579 0.0150 21 6 2.9393 -10.7545 0.0075 22 6 2.0600 -9.6868 -0.0009 23 17 0.3453 -9.9573 -0.0101 24 1 -0.4851 0.8401 -0.0004 25 1 0.3534 -2.3906 -0.0002 26 1 0.6182 -4.9209 -0.8897 27 1 0.6162 -4.9205 0.8904 28 1 4.4010 -7.2364 0.0079 29 1 2.5528 -11.7629 0.0071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781358585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:05 Heat of formation + Delta-G solvation = -84.581027 kcal Electronic energy + Delta-G solvation = -20681.216360 eV Core-core repulsion = 16850.146957 eV Total energy + Delta-G solvation = -3831.069403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 318.001 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18853 -40.00914 -38.21510 -37.27073 -36.85310 -36.26471 -34.07257 -33.45356 -31.44582 -31.39884 -28.66507 -25.80107 -24.59156 -24.05376 -21.62179 -19.68711 -18.78819 -18.17570 -17.61142 -16.86112 -16.62738 -16.59878 -16.03624 -15.39500 -15.21768 -14.80941 -14.55111 -14.10738 -14.02865 -13.18439 -12.97582 -12.95715 -12.41791 -12.16025 -11.94818 -11.69927 -11.66544 -11.55515 -11.15513 -10.85355 -10.59809 -10.52620 -10.50258 -10.34445 -10.06870 -9.64904 -9.32403 -8.60829 -8.14147 -6.54877 -3.97289 -0.13431 0.22572 1.21502 1.61161 2.19843 2.27587 3.02041 3.11963 3.20239 3.24287 3.66587 3.75345 3.99711 4.09207 4.12891 4.23936 4.78117 4.84920 5.04659 5.09348 5.14888 5.41628 5.58564 5.62440 5.94744 6.31660 6.94735 7.42908 7.51962 7.87895 8.41797 9.01455 9.32780 9.81976 10.61994 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.003013 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.238917 B = 9290.184740 C =10892.267048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.437 3.563 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.316 6.316 14 C 0.501 3.499 15 O -0.475 6.475 16 C -0.052 4.052 17 C -0.083 4.083 18 C 0.166 3.834 19 Cl -0.007 7.007 20 N -0.443 5.443 21 C 0.127 3.873 22 C -0.042 4.042 23 Cl -0.003 7.003 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -20.149 0.007 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.187 5.187 10 C 0.221 3.779 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.231 6.231 14 C 0.342 3.658 15 O -0.362 6.362 16 C -0.062 4.062 17 C -0.104 4.104 18 C 0.002 3.998 19 Cl 0.022 6.978 20 N -0.155 5.155 21 C -0.032 4.032 22 C -0.072 4.072 23 Cl 0.026 6.974 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.195 0.805 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.901 -20.676 0.013 21.041 hybrid contribution -0.928 1.533 -0.007 1.792 sum 2.974 -19.143 0.006 19.373 Atomic orbital electron populations 1.69602 1.06011 1.28692 1.49293 1.25323 0.95701 0.99924 0.96744 0.85847 0.78760 0.79995 0.79229 1.19720 1.20837 1.19717 1.19677 0.93472 0.81684 1.48467 0.87597 1.41690 1.09403 1.04051 1.63545 1.19235 0.88331 0.83963 0.86353 1.90564 1.13319 1.86710 1.55428 1.22867 0.90668 0.84015 1.03924 1.86558 1.40251 1.13492 1.82757 1.20622 0.86786 0.83718 0.74660 1.90931 1.14969 1.86580 1.43739 1.19324 0.92974 0.91061 1.02832 1.22422 0.91315 1.01413 0.95236 1.21684 0.88693 0.89499 0.99914 1.98449 1.06263 1.96906 1.96209 1.67052 1.13724 1.24212 1.10472 1.22733 0.85903 0.98892 0.95670 1.22330 0.89421 0.93711 1.01700 1.98457 1.07045 1.96152 1.95722 0.91504 0.77113 0.89105 0.89114 0.80536 0.79819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.49 13.05 55.50 0.72 -22.77 15 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 15 3 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 7 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 15 8 H 0.11 2.96 7.16 -52.49 -0.38 2.59 15 9 N -0.55 -13.42 5.29 -10.97 -0.06 -13.47 15 10 C 0.44 10.03 7.86 -10.99 -0.09 9.94 15 11 O -0.58 -15.26 16.08 -14.11 -0.23 -15.49 15 12 C 0.06 1.11 5.95 36.00 0.21 1.32 15 13 O -0.32 -5.43 9.11 -47.12 -0.43 -5.86 15 14 C 0.50 7.46 7.92 34.72 0.27 7.74 15 15 O -0.48 -7.53 13.95 -19.22 -0.27 -7.80 15 16 C -0.05 -0.64 5.91 -104.64 -0.62 -1.26 15 17 C -0.08 -0.95 9.47 -38.97 -0.37 -1.32 15 18 C 0.17 1.80 7.27 -17.50 -0.13 1.67 15 19 Cl -0.01 -0.07 29.10 -51.86 -1.51 -1.58 15 20 N -0.44 -4.62 10.31 -10.38 -0.11 -4.73 15 21 C 0.13 1.11 10.98 -17.54 -0.19 0.92 15 22 C -0.04 -0.44 6.38 -38.89 -0.25 -0.69 15 23 Cl 0.00 -0.03 26.23 -51.86 -1.36 -1.39 15 24 H 0.28 6.83 8.31 -40.82 -0.34 6.50 15 25 H 0.40 9.12 7.90 -40.82 -0.32 8.80 15 26 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 27 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 28 H 0.18 2.03 7.71 -52.49 -0.40 1.63 15 29 H 0.18 0.98 8.06 -52.49 -0.42 0.56 15 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -30.49 306.32 -6.54 -37.03 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -1.51 Total: 5.60 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -1.39 Total: 10.59 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.56 Total: -40.97 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.92 Total: -29.15 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -2.87 Total: -2.97 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.49 -6.54 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781358585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.553 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds