Wall clock time and date at job start Tue Mar 31 2020 12:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99763 * 2 1 4 4 H 1.48513 * 109.46891 * 239.99411 * 3 2 1 5 5 H 1.48499 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47487 * 119.99612 * 3 2 1 7 7 C 1.38948 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00116 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00214 * 180.02562 * 9 7 2 11 11 O 1.21286 * 119.99842 * 0.02562 * 10 9 7 12 12 C 1.50698 * 119.99745 * 180.02562 * 10 9 7 13 13 O 1.45207 * 109.46939 * 180.02562 * 12 10 9 14 14 C 1.34681 * 116.99956 * 180.02562 * 13 12 10 15 15 O 1.21439 * 120.00170 * 359.97438 * 14 13 12 16 16 C 1.47970 * 119.99707 * 180.02562 * 14 13 12 17 17 C 1.39862 * 120.93111 * 359.97438 * 16 14 13 18 18 C 1.38261 * 118.99825 * 179.72213 * 17 16 14 19 19 Cl 1.73598 * 119.54137 * 180.25769 * 18 17 16 20 20 N 1.31925 * 120.91362 * 0.28259 * 18 17 16 21 21 C 1.31785 * 122.06369 * 359.97438 * 20 18 17 22 22 C 1.38319 * 120.89641 * 0.02562 * 21 20 18 23 23 Cl 1.73597 * 120.50704 * 180.02562 * 22 21 20 24 24 H 0.97006 * 120.00362 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99695 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47432 * 60.00332 * 12 10 9 27 27 H 1.09002 * 109.47204 * 299.99133 * 12 10 9 28 28 H 1.08002 * 120.50259 * 0.02562 * 17 16 14 29 29 H 1.07997 * 119.54964 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2438 -4.8629 0.0010 13 8 2.1874 -5.9666 0.0030 14 6 1.6726 -7.2111 0.0022 15 8 0.4687 -7.3702 0.0004 16 6 2.5740 -8.3845 0.0046 17 6 3.9634 -8.2238 0.0072 18 6 4.7682 -9.3480 0.0154 19 17 6.4944 -9.1648 0.0255 20 7 4.2424 -10.5579 0.0150 21 6 2.9393 -10.7545 0.0075 22 6 2.0600 -9.6868 -0.0009 23 17 0.3453 -9.9573 -0.0101 24 1 -0.4851 0.8401 -0.0004 25 1 0.3534 -2.3906 -0.0002 26 1 0.6182 -4.9209 -0.8897 27 1 0.6162 -4.9205 0.8904 28 1 4.4010 -7.2364 0.0079 29 1 2.5528 -11.7629 0.0071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781358585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:04 Heat of formation + Delta-G solvation = -103.536104 kcal Electronic energy + Delta-G solvation = -20682.038313 eV Core-core repulsion = 16850.146957 eV Total energy + Delta-G solvation = -3831.891356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 318.001 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.20611 -41.13767 -39.99750 -38.15774 -37.71572 -37.53039 -36.03581 -34.37513 -33.41195 -32.22755 -30.19968 -27.11131 -26.14224 -24.96311 -22.73807 -21.46060 -20.08683 -19.87525 -18.68686 -17.92285 -17.88830 -17.58464 -17.55146 -16.85081 -16.29316 -16.20407 -15.76614 -15.58480 -15.56058 -14.71048 -14.10826 -13.95671 -13.67002 -13.64015 -13.54853 -12.93432 -12.86336 -12.51540 -12.48444 -12.43385 -12.12830 -11.95157 -11.84051 -11.56910 -11.42835 -11.00371 -10.52076 -10.13856 -10.11739 -8.52087 -6.02578 -1.06677 -0.59175 0.38812 0.74711 1.07874 1.12349 1.37964 1.44196 1.55004 1.87132 2.13845 2.28069 2.80788 3.04751 3.13653 3.21838 3.26680 3.38758 3.90561 3.96915 4.14108 4.19121 4.21461 4.35574 4.83680 5.03006 5.37302 5.88413 6.14082 6.30384 6.48973 7.02973 7.39831 7.92903 8.64405 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.003013 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.238917 B = 9290.184740 C =10892.267048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.436 3.564 11 O -0.616 6.616 12 C 0.073 3.927 13 O -0.332 6.332 14 C 0.504 3.496 15 O -0.485 6.485 16 C -0.064 4.064 17 C -0.086 4.086 18 C 0.164 3.836 19 Cl -0.003 7.003 20 N -0.448 5.448 21 C 0.144 3.856 22 C -0.040 4.040 23 Cl -0.003 7.003 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.171 0.829 29 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -21.239 0.008 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.223 3.777 11 O -0.502 6.502 12 C -0.004 4.004 13 O -0.247 6.247 14 C 0.347 3.653 15 O -0.373 6.373 16 C -0.074 4.074 17 C -0.107 4.107 18 C 0.001 3.999 19 Cl 0.026 6.974 20 N -0.159 5.159 21 C -0.014 4.014 22 C -0.070 4.070 23 Cl 0.027 6.973 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.188 0.812 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.576 -21.781 0.014 22.072 hybrid contribution -0.834 1.756 -0.007 1.944 sum 2.741 -20.025 0.007 20.212 Atomic orbital electron populations 1.69660 1.06905 1.29771 1.49071 1.26106 0.96578 1.02562 0.95695 0.84931 0.77748 0.76226 0.79115 1.19524 1.19492 1.19521 1.19674 0.92961 0.83331 1.50690 0.89677 1.41726 1.09600 1.04156 1.63976 1.20046 0.88097 0.85302 0.84246 1.90533 1.15343 1.87648 1.56718 1.22636 0.89906 0.81812 1.06004 1.86550 1.40574 1.14269 1.83325 1.20951 0.87099 0.83349 0.73932 1.90920 1.15452 1.86535 1.44388 1.19234 0.92905 0.90703 1.04589 1.22318 0.91140 1.01470 0.95817 1.21699 0.88912 0.89504 0.99768 1.98451 1.05857 1.96938 1.96153 1.67165 1.14449 1.23749 1.10568 1.23333 0.84941 0.99917 0.93240 1.22446 0.89658 0.93361 1.01488 1.98462 1.07125 1.96065 1.95663 0.90985 0.76510 0.86929 0.86939 0.81188 0.76034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.59 13.05 21.66 0.28 -47.30 15 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 15 3 Si 1.00 41.26 29.55 68.60 2.03 43.29 15 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 7 C -0.34 -18.46 9.68 84.04 0.81 -17.64 15 8 H 0.09 4.93 7.16 -2.91 -0.02 4.90 15 9 N -0.56 -27.57 5.29 -307.00 -1.62 -29.19 15 10 C 0.44 20.29 7.86 87.66 0.69 20.98 15 11 O -0.62 -33.45 16.08 15.75 0.25 -33.20 15 12 C 0.07 2.55 5.95 71.24 0.42 2.97 15 13 O -0.33 -11.30 9.11 -49.52 -0.45 -11.75 15 14 C 0.50 14.61 7.92 70.40 0.56 15.17 15 15 O -0.49 -14.77 13.95 20.03 0.28 -14.49 15 16 C -0.06 -1.53 5.91 -19.88 -0.12 -1.64 15 17 C -0.09 -1.93 9.47 22.67 0.21 -1.72 15 18 C 0.16 3.37 7.27 84.68 0.62 3.98 15 19 Cl 0.00 -0.05 29.10 -2.72 -0.08 -0.13 15 20 N -0.45 -8.37 10.31 -186.76 -1.93 -10.29 15 21 C 0.14 2.13 10.98 84.72 0.93 3.06 15 22 C -0.04 -0.76 6.38 22.72 0.14 -0.61 15 23 Cl 0.00 -0.05 26.23 -2.72 -0.07 -0.12 15 24 H 0.28 13.69 8.31 -92.70 -0.77 12.92 15 25 H 0.40 18.62 7.90 -92.71 -0.73 17.89 15 26 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 27 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 28 H 0.17 3.99 7.71 -2.91 -0.02 3.97 15 29 H 0.22 1.48 8.06 -2.91 -0.02 1.46 15 Total: -1.00 -65.12 306.32 3.94 -61.18 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.51 Total: 17.44 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 4.74 Total: 24.58 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -3.27 Total: -86.79 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: 0.08 Total: -59.44 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.15 Total: -0.25 kcal Total: -65.12 3.94 -61.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781358585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.360 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds