Wall clock time and date at job start Tue Mar 31 2020 12:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48498 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46856 * 300.00077 * 3 2 1 6 6 H 1.48503 * 109.47264 * 59.99641 * 3 2 1 7 7 C 1.37875 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46936 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00042 * 180.02562 * 11 10 9 13 13 S 1.71205 * 120.00005 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00290 * 180.27290 * 12 11 10 15 15 C 1.40003 * 120.00312 * 175.40835 * 14 12 11 16 16 C 1.38856 * 120.05670 * 47.35756 * 15 14 12 17 17 C 1.38116 * 119.94883 * 179.67868 * 16 15 14 18 18 C 1.38402 * 120.07833 * 0.61197 * 17 16 15 19 19 Cl 1.73602 * 119.93517 * 179.70152 * 18 17 16 20 20 C 1.38359 * 120.12504 * 359.68598 * 18 17 16 21 21 C 1.38217 * 120.04632 * 359.97438 * 20 18 17 22 22 Cl 1.73606 * 120.04131 * 180.02562 * 21 20 18 23 23 H 0.96996 * 120.00709 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46928 * 59.99379 * 9 7 2 25 25 H 1.08996 * 109.46839 * 299.99995 * 9 7 2 26 26 H 1.08990 * 109.47547 * 59.99952 * 10 9 7 27 27 H 1.09001 * 109.47098 * 299.99229 * 10 9 7 28 28 H 0.97004 * 120.00325 * 359.97438 * 11 10 9 29 29 H 0.97000 * 119.99676 * 355.41492 * 14 12 11 30 30 H 1.07996 * 120.02382 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.96123 * 180.31837 * 17 16 15 32 32 H 1.08002 * 119.97408 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6619 0.0005 11 7 1.5130 -4.9307 -0.0001 12 6 2.1870 -6.0979 0.0003 13 16 3.8990 -6.0978 0.0009 14 7 1.5132 -7.2652 -0.0058 15 6 2.2104 -8.4754 -0.1024 16 6 3.3178 -8.7063 0.7028 17 6 3.9999 -9.9037 0.6103 18 6 3.5886 -10.8684 -0.2928 19 17 4.4534 -12.3690 -0.4114 20 6 2.4893 -10.6392 -1.1011 21 6 1.7986 -9.4456 -1.0079 22 17 0.4189 -9.1584 -2.0217 23 1 -0.4851 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8904 27 1 2.8721 -3.6042 -0.8895 28 1 0.5430 -4.9309 0.0000 29 1 0.5452 -7.2667 0.0567 30 1 3.6425 -7.9521 1.4042 31 1 4.8582 -10.0855 1.2402 32 1 2.1702 -11.3939 -1.8047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783756129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:11 Heat of formation + Delta-G solvation = 22.614816 kcal Electronic energy + Delta-G solvation = -18521.678823 eV Core-core repulsion = 15273.843747 eV Total energy + Delta-G solvation = -3247.835077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44249 -38.45833 -37.08371 -36.65282 -35.46830 -33.20077 -31.25868 -30.60689 -29.01216 -25.35451 -24.12390 -22.97300 -22.65790 -21.34153 -18.84278 -18.23979 -17.14561 -16.58285 -16.19356 -15.74704 -14.98563 -14.85251 -14.63921 -14.33587 -14.13847 -14.11077 -13.13403 -12.84960 -12.58467 -12.40108 -12.14890 -11.52081 -11.43928 -11.36876 -11.23554 -11.11329 -11.03138 -10.71212 -10.61526 -9.82850 -9.58751 -9.44539 -9.25888 -8.60342 -8.50742 -7.72623 -7.05697 -6.21317 -4.24892 0.50694 0.86063 1.49475 1.50197 1.89732 2.03723 2.57089 3.19134 3.22919 3.31042 3.36211 3.57209 4.33817 4.39614 4.68457 4.82991 4.89878 5.16715 5.26530 5.54144 5.70475 5.79634 5.89170 6.01229 6.10240 6.33127 6.45964 6.54155 6.85479 7.30162 7.36352 7.37087 7.76721 8.11598 8.81023 9.41281 10.90320 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.027133 B = 0.002623 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.703108 B =10672.845278 C =11478.209341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.011 3.989 10 C 0.120 3.880 11 N -0.653 5.653 12 C 0.553 3.447 13 S -0.629 6.629 14 N -0.646 5.646 15 C 0.155 3.845 16 C -0.043 4.043 17 C -0.101 4.101 18 C -0.022 4.022 19 Cl -0.062 7.062 20 C -0.103 4.103 21 C -0.034 4.034 22 Cl -0.055 7.055 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.399 0.601 29 H 0.408 0.592 30 H 0.166 0.834 31 H 0.144 0.856 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 -23.564 0.236 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.082 0.918 9 C -0.027 4.027 10 C -0.001 4.001 11 N -0.276 5.276 12 C 0.193 3.807 13 S -0.500 6.500 14 N -0.275 5.275 15 C 0.059 3.941 16 C -0.066 4.066 17 C -0.121 4.121 18 C -0.050 4.050 19 Cl -0.033 7.033 20 C -0.124 4.124 21 C -0.064 4.064 22 Cl -0.026 7.026 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.235 0.765 29 H 0.247 0.753 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.707 -23.273 0.113 23.336 hybrid contribution -1.566 0.877 -0.245 1.811 sum 0.141 -22.397 -0.132 22.398 Atomic orbital electron populations 1.69952 1.06168 1.27028 1.50135 1.24997 0.94913 0.99592 0.94729 0.86412 0.80268 0.83010 0.77680 1.19359 1.20868 1.20872 1.21000 0.93457 0.89811 1.51711 0.91751 1.19402 0.94166 0.91114 0.97981 1.22399 0.96131 0.77967 1.03599 1.45813 1.10436 1.05452 1.65910 1.22386 0.96134 0.81291 0.80840 1.93349 0.89010 1.93643 1.73950 1.42071 1.09677 1.02509 1.73225 1.17101 0.96248 0.84345 0.96387 1.21515 0.92121 0.95477 0.97474 1.21019 1.00976 0.91639 0.98507 1.20784 0.95340 0.89291 0.99541 1.98382 1.75858 1.31592 1.97515 1.20592 0.94771 0.96410 1.00602 1.20667 0.93985 0.96501 0.95248 1.98392 1.40966 1.96128 1.67093 0.92762 0.95882 0.95874 0.89954 0.89994 0.76496 0.75291 0.81684 0.83780 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.71 9.11 -34.44 -0.31 -14.03 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.27 5.07 -4.04 -0.02 2.25 16 11 N -0.65 -9.73 5.56 -62.03 -0.34 -10.08 16 12 C 0.55 8.11 7.85 -86.92 -0.68 7.43 16 13 S -0.63 -11.43 25.00 -107.50 -2.69 -14.11 16 14 N -0.65 -7.29 4.83 -11.36 -0.05 -7.34 16 15 C 0.15 1.75 5.87 -83.63 -0.49 1.26 16 16 C -0.04 -0.48 7.88 -39.40 -0.31 -0.79 16 17 C -0.10 -0.97 9.82 -39.57 -0.39 -1.36 16 18 C -0.02 -0.21 6.32 -39.48 -0.25 -0.46 16 19 Cl -0.06 -0.53 28.95 -51.86 -1.50 -2.03 16 20 C -0.10 -0.96 9.61 -39.54 -0.38 -1.34 16 21 C -0.03 -0.35 6.34 -39.33 -0.25 -0.60 16 22 Cl -0.05 -0.53 28.23 -51.86 -1.46 -1.99 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.64 7.99 -51.93 -0.41 1.22 16 27 H 0.08 1.66 7.99 -51.93 -0.42 1.25 16 28 H 0.40 4.95 8.49 -40.82 -0.35 4.61 16 29 H 0.41 3.56 8.55 -40.82 -0.35 3.21 16 30 H 0.17 2.07 6.31 -49.76 -0.31 1.75 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -29.80 322.91 -11.87 -41.66 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -3.07 Total: 3.74 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.32 Total: -6.01 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.34 Total: -41.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -11.43 SS G_CDS: -2.69 Total: -14.11 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -2.97 Total: -4.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.80 -11.87 -41.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783756129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.279 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds