Wall clock time and date at job start Tue Mar 31 2020 12:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48498 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46856 * 300.00077 * 3 2 1 6 6 H 1.48503 * 109.47264 * 59.99641 * 3 2 1 7 7 C 1.37875 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46936 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00042 * 180.02562 * 11 10 9 13 13 S 1.71205 * 120.00005 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00290 * 180.27290 * 12 11 10 15 15 C 1.40003 * 120.00312 * 175.40835 * 14 12 11 16 16 C 1.38856 * 120.05670 * 47.35756 * 15 14 12 17 17 C 1.38116 * 119.94883 * 179.67868 * 16 15 14 18 18 C 1.38402 * 120.07833 * 0.61197 * 17 16 15 19 19 Cl 1.73602 * 119.93517 * 179.70152 * 18 17 16 20 20 C 1.38359 * 120.12504 * 359.68598 * 18 17 16 21 21 C 1.38217 * 120.04632 * 359.97438 * 20 18 17 22 22 Cl 1.73606 * 120.04131 * 180.02562 * 21 20 18 23 23 H 0.96996 * 120.00709 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46928 * 59.99379 * 9 7 2 25 25 H 1.08996 * 109.46839 * 299.99995 * 9 7 2 26 26 H 1.08990 * 109.47547 * 59.99952 * 10 9 7 27 27 H 1.09001 * 109.47098 * 299.99229 * 10 9 7 28 28 H 0.97004 * 120.00325 * 359.97438 * 11 10 9 29 29 H 0.97000 * 119.99676 * 355.41492 * 14 12 11 30 30 H 1.07996 * 120.02382 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.96123 * 180.31837 * 17 16 15 32 32 H 1.08002 * 119.97408 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6619 0.0005 11 7 1.5130 -4.9307 -0.0001 12 6 2.1870 -6.0979 0.0003 13 16 3.8990 -6.0978 0.0009 14 7 1.5132 -7.2652 -0.0058 15 6 2.2104 -8.4754 -0.1024 16 6 3.3178 -8.7063 0.7028 17 6 3.9999 -9.9037 0.6103 18 6 3.5886 -10.8684 -0.2928 19 17 4.4534 -12.3690 -0.4114 20 6 2.4893 -10.6392 -1.1011 21 6 1.7986 -9.4456 -1.0079 22 17 0.4189 -9.1584 -2.0217 23 1 -0.4851 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8904 27 1 2.8721 -3.6042 -0.8895 28 1 0.5430 -4.9309 0.0000 29 1 0.5452 -7.2667 0.0567 30 1 3.6425 -7.9521 1.4042 31 1 4.8582 -10.0855 1.2402 32 1 2.1702 -11.3939 -1.8047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783756129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:10 Heat of formation + Delta-G solvation = 7.041502 kcal Electronic energy + Delta-G solvation = -18522.354133 eV Core-core repulsion = 15273.843747 eV Total energy + Delta-G solvation = -3248.510386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.38688 -39.57080 -37.88418 -37.52150 -36.63555 -35.05276 -32.14652 -32.06142 -30.19230 -27.00933 -25.37351 -23.93779 -23.78173 -22.86328 -19.94640 -19.34345 -18.52719 -17.96072 -17.13185 -17.03492 -16.52083 -16.23228 -15.91607 -15.62028 -15.06895 -14.95843 -14.36051 -14.31539 -13.67336 -13.39697 -13.32551 -13.09976 -12.86029 -12.55850 -12.50103 -12.32586 -12.15891 -12.02794 -11.96044 -11.70078 -11.41740 -10.81016 -10.56585 -10.10180 -9.52249 -9.09455 -8.41639 -8.26683 -6.36026 -0.40017 0.05397 0.33577 0.70896 0.74809 1.13423 1.39970 1.41019 1.45014 1.56292 2.34087 2.37337 2.47660 3.09712 3.59495 3.93179 3.96276 4.09494 4.26939 4.41161 4.43810 4.75872 4.79527 4.82677 4.99253 5.06298 5.22962 5.45444 5.47543 5.50506 5.72212 5.81584 6.09222 6.23611 6.77779 7.33820 8.85230 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.027133 B = 0.002623 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.703108 B =10672.845278 C =11478.209341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.148 3.852 11 N -0.649 5.649 12 C 0.576 3.424 13 S -0.694 6.694 14 N -0.622 5.622 15 C 0.135 3.865 16 C -0.051 4.051 17 C -0.098 4.098 18 C -0.021 4.021 19 Cl -0.051 7.051 20 C -0.099 4.099 21 C -0.034 4.034 22 Cl -0.048 7.048 23 H 0.265 0.735 24 H 0.010 0.990 25 H 0.012 0.988 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.414 0.586 29 H 0.424 0.576 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 -24.780 -0.026 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.025 3.975 11 N -0.273 5.273 12 C 0.213 3.787 13 S -0.566 6.566 14 N -0.251 5.251 15 C 0.040 3.960 16 C -0.074 4.074 17 C -0.119 4.119 18 C -0.048 4.048 19 Cl -0.022 7.022 20 C -0.119 4.119 21 C -0.064 4.064 22 Cl -0.019 7.019 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.031 0.969 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.253 0.747 29 H 0.265 0.735 30 H 0.169 0.831 31 H 0.177 0.823 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.597 -24.560 -0.147 24.613 hybrid contribution -1.582 1.077 -0.169 1.921 sum 0.015 -23.483 -0.316 23.486 Atomic orbital electron populations 1.70042 1.07470 1.27950 1.51166 1.25808 0.95727 1.02975 0.94474 0.85443 0.79159 0.79002 0.77772 1.18848 1.20454 1.20360 1.21421 0.93741 0.91489 1.51239 0.91958 1.19194 0.94235 0.91619 0.96660 1.21753 0.94747 0.78392 1.02620 1.45333 1.10967 1.04437 1.66572 1.21877 0.94836 0.81927 0.80050 1.93494 0.92136 1.94353 1.76568 1.41928 1.10395 1.01626 1.71160 1.17239 0.96894 0.84350 0.97551 1.21414 0.92468 0.95933 0.97584 1.21179 1.01029 0.91085 0.98566 1.20862 0.95275 0.89591 0.99099 1.98392 1.75590 1.30744 1.97433 1.20829 0.94281 0.96338 1.00493 1.20684 0.94224 0.96432 0.95022 1.98398 1.40563 1.96129 1.66831 0.92575 0.97172 0.96944 0.90831 0.91243 0.74730 0.73457 0.83132 0.82275 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.39 13.29 21.45 0.28 -52.10 16 2 C 0.01 0.49 5.46 84.65 0.46 0.95 16 3 Si 0.96 42.47 29.54 68.60 2.03 44.49 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -28.60 9.11 25.60 0.23 -28.36 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 0.95 5.09 29.85 0.15 1.10 16 10 C 0.15 5.61 5.07 86.38 0.44 6.05 16 11 N -0.65 -18.89 5.56 -350.17 -1.95 -20.84 16 12 C 0.58 16.48 7.85 179.05 1.40 17.88 16 13 S -0.69 -25.35 25.00 -56.49 -1.41 -26.76 16 14 N -0.62 -13.25 4.83 -189.86 -0.92 -14.17 16 15 C 0.13 2.88 5.87 38.15 0.22 3.11 16 16 C -0.05 -1.12 7.88 22.39 0.18 -0.95 16 17 C -0.10 -1.77 9.82 22.28 0.22 -1.55 16 18 C -0.02 -0.35 6.32 22.34 0.14 -0.21 16 19 Cl -0.05 -0.76 28.95 -2.72 -0.08 -0.84 16 20 C -0.10 -1.62 9.61 22.29 0.21 -1.41 16 21 C -0.03 -0.63 6.34 22.44 0.14 -0.49 16 22 Cl -0.05 -0.84 28.23 -2.72 -0.08 -0.91 16 23 H 0.27 14.16 8.31 -92.71 -0.77 13.38 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 2.95 7.99 -2.39 -0.02 2.93 16 27 H 0.07 2.84 7.99 -2.39 -0.02 2.82 16 28 H 0.41 9.79 8.49 -92.71 -0.79 9.00 16 29 H 0.42 6.58 8.55 -92.71 -0.79 5.79 16 30 H 0.15 3.80 6.31 -4.65 -0.03 3.77 16 31 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -63.31 322.91 1.28 -62.03 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -0.40 Total: 12.97 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 3.81 Total: -3.88 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.58 Total: -87.11 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -25.35 SS G_CDS: -1.41 Total: -26.76 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.16 Total: -1.75 kcal Total: -63.31 1.28 -62.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783756129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.074 kcal (2) G-P(sol) polarization free energy of solvation -63.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds