Wall clock time and date at job start Tue Mar 31 2020 12:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48494 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47087 * 300.00337 * 3 2 1 6 6 H 1.48500 * 109.47242 * 60.00258 * 3 2 1 7 7 C 1.37881 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46903 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99995 * 180.02562 * 11 10 9 13 13 S 1.71204 * 119.99997 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00253 * 179.97438 * 12 11 10 15 15 C 1.39939 * 120.00425 * 185.53950 * 14 12 11 16 16 C 1.38895 * 120.05075 * 221.87073 * 15 14 12 17 17 C 1.38105 * 119.96449 * 180.02562 * 16 15 14 18 18 C 1.38379 * 120.07045 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.94847 * 180.27221 * 18 17 16 20 20 C 1.38481 * 120.10498 * 359.97438 * 18 17 16 21 21 Cl 1.73597 * 119.98214 * 180.02562 * 20 18 17 22 22 C 1.38234 * 120.03144 * 359.97438 * 20 18 17 23 23 H 0.97001 * 120.00359 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47116 * 60.00644 * 9 7 2 25 25 H 1.09000 * 109.47274 * 300.00294 * 9 7 2 26 26 H 1.09007 * 109.47087 * 59.99947 * 10 9 7 27 27 H 1.09000 * 109.47268 * 300.00141 * 10 9 7 28 28 H 0.96998 * 119.99999 * 359.97438 * 11 10 9 29 29 H 0.97004 * 119.99865 * 5.53727 * 14 12 11 30 30 H 1.07997 * 120.02383 * 0.04352 * 16 15 14 31 31 H 1.08001 * 119.96538 * 180.02562 * 17 16 15 32 32 H 1.08008 * 120.03335 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 16 3.8987 -6.0980 0.0012 14 7 1.5129 -7.2652 -0.0008 15 6 2.2076 -8.4743 0.1166 16 6 1.8467 -9.5627 -0.6671 17 6 2.5332 -10.7553 -0.5494 18 6 3.5798 -10.8671 0.3489 19 17 4.4452 -12.3655 0.4892 20 6 3.9421 -9.7837 1.1317 21 17 5.2560 -9.9273 2.2571 22 6 3.2586 -8.5877 1.0166 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.5428 -4.9307 -0.0011 29 1 0.5463 -7.2672 -0.0822 30 1 1.0300 -9.4766 -1.3684 31 1 2.2529 -11.6015 -1.1591 32 1 3.5408 -7.7429 1.6275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783758642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:11 Heat of formation + Delta-G solvation = 23.749308 kcal Electronic energy + Delta-G solvation = -18438.297362 eV Core-core repulsion = 15190.511481 eV Total energy + Delta-G solvation = -3247.785881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43105 -38.49695 -36.85437 -36.64057 -35.36816 -33.20471 -31.24109 -30.61061 -29.05107 -25.37888 -24.14009 -22.95900 -22.67148 -21.35945 -18.81075 -18.27926 -17.01038 -16.59803 -16.16095 -15.77417 -14.97792 -14.93670 -14.63028 -14.32885 -14.21906 -14.08913 -13.17878 -12.82544 -12.41164 -12.14977 -12.02886 -11.71137 -11.45186 -11.23176 -11.13617 -11.03434 -11.02630 -10.72246 -10.61428 -9.84176 -9.62707 -9.45621 -9.17503 -8.59545 -8.49115 -7.70353 -7.05539 -6.22679 -4.26184 0.50879 0.88525 1.49979 1.67823 1.91013 2.08766 2.57699 3.20290 3.22233 3.30431 3.35712 3.55191 4.32895 4.39480 4.64630 4.82175 4.91942 5.15479 5.27192 5.49283 5.67072 5.76209 5.84787 5.97889 6.08446 6.30853 6.45958 6.53479 6.84733 7.28252 7.34422 7.35117 7.75495 8.10233 8.79764 9.40102 10.88955 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.002473 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.552975 B =11319.138425 C =11916.740559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.064 0.936 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.653 5.653 12 C 0.547 3.453 13 S -0.624 6.624 14 N -0.646 5.646 15 C 0.161 3.839 16 C -0.114 4.114 17 C -0.094 4.094 18 C -0.034 4.034 19 Cl -0.055 7.055 20 C -0.022 4.022 21 Cl -0.045 7.045 22 C -0.055 4.055 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.398 0.602 29 H 0.409 0.591 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -23.545 0.734 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.083 0.917 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.276 5.276 12 C 0.187 3.813 13 S -0.494 6.494 14 N -0.275 5.275 15 C 0.066 3.934 16 C -0.136 4.136 17 C -0.114 4.114 18 C -0.062 4.062 19 Cl -0.026 7.026 20 C -0.052 4.052 21 Cl -0.016 7.016 22 C -0.078 4.078 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.235 0.765 29 H 0.247 0.753 30 H 0.157 0.843 31 H 0.163 0.837 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.469 -23.292 0.845 23.354 hybrid contribution -1.285 0.893 -0.082 1.567 sum 0.184 -22.400 0.763 22.413 Atomic orbital electron populations 1.69950 1.06173 1.27040 1.50133 1.24996 0.94917 0.99603 0.94706 0.86410 0.80281 0.82983 0.77687 1.19352 1.20869 1.20855 1.21003 0.93473 0.89809 1.51727 0.91741 1.19401 0.94153 0.91121 0.97956 1.22409 0.96151 0.77982 1.03640 1.45827 1.10406 1.05493 1.65877 1.22475 0.96294 0.81399 0.81085 1.93478 0.88795 1.93749 1.73362 1.42132 1.09726 1.02657 1.72984 1.17187 0.95654 0.84433 0.96096 1.20918 1.01952 0.92149 0.98575 1.20683 0.94326 0.98366 0.97999 1.20773 0.97342 0.87861 1.00236 1.98381 1.75818 1.31107 1.97259 1.20394 0.94681 0.93642 0.96479 1.98391 1.45861 1.97980 1.59378 1.21295 0.93505 0.95897 0.97108 0.92756 0.95903 0.95877 0.89911 0.89999 0.76522 0.75256 0.84263 0.83701 0.81827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.70 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.64 9.11 -34.44 -0.31 -13.96 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.23 5.07 -4.04 -0.02 2.21 16 11 N -0.65 -9.37 5.56 -62.03 -0.34 -9.72 16 12 C 0.55 7.78 7.75 -86.92 -0.67 7.11 16 13 S -0.62 -11.49 25.06 -107.50 -2.69 -14.19 16 14 N -0.65 -6.59 5.33 -11.40 -0.06 -6.65 16 15 C 0.16 1.72 5.91 -83.69 -0.49 1.23 16 16 C -0.11 -0.94 9.97 -39.39 -0.39 -1.34 16 17 C -0.09 -0.78 9.82 -39.58 -0.39 -1.16 16 18 C -0.03 -0.35 6.32 -39.44 -0.25 -0.60 16 19 Cl -0.05 -0.53 27.95 -51.86 -1.45 -1.98 16 20 C -0.02 -0.26 6.32 -39.49 -0.25 -0.51 16 21 Cl -0.05 -0.54 27.95 -51.86 -1.45 -1.99 16 22 C -0.05 -0.68 7.64 -39.36 -0.30 -0.98 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.64 7.99 -51.92 -0.41 1.23 16 27 H 0.08 1.64 7.99 -51.93 -0.42 1.22 16 28 H 0.40 4.62 8.49 -40.82 -0.35 4.28 16 29 H 0.41 2.68 8.84 -40.82 -0.36 2.32 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.16 2.35 6.27 -49.84 -0.31 2.04 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -30.68 322.48 -11.83 -42.51 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.08 Total: 2.14 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.32 Total: -6.38 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.33 Total: -40.65 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -11.49 SS G_CDS: -2.69 Total: -14.19 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -2.90 Total: -3.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.68 -11.83 -42.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783758642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.255 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds