Wall clock time and date at job start Tue Mar 31 2020 12:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00051 * 2 1 4 4 H 1.48494 * 109.47425 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47087 * 300.00337 * 3 2 1 6 6 H 1.48500 * 109.47242 * 60.00258 * 3 2 1 7 7 C 1.37881 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46903 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99995 * 180.02562 * 11 10 9 13 13 S 1.71204 * 119.99997 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00253 * 179.97438 * 12 11 10 15 15 C 1.39939 * 120.00425 * 185.53950 * 14 12 11 16 16 C 1.38895 * 120.05075 * 221.87073 * 15 14 12 17 17 C 1.38105 * 119.96449 * 180.02562 * 16 15 14 18 18 C 1.38379 * 120.07045 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.94847 * 180.27221 * 18 17 16 20 20 C 1.38481 * 120.10498 * 359.97438 * 18 17 16 21 21 Cl 1.73597 * 119.98214 * 180.02562 * 20 18 17 22 22 C 1.38234 * 120.03144 * 359.97438 * 20 18 17 23 23 H 0.97001 * 120.00359 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47116 * 60.00644 * 9 7 2 25 25 H 1.09000 * 109.47274 * 300.00294 * 9 7 2 26 26 H 1.09007 * 109.47087 * 59.99947 * 10 9 7 27 27 H 1.09000 * 109.47268 * 300.00141 * 10 9 7 28 28 H 0.96998 * 119.99999 * 359.97438 * 11 10 9 29 29 H 0.97004 * 119.99865 * 5.53727 * 14 12 11 30 30 H 1.07997 * 120.02383 * 0.04352 * 16 15 14 31 31 H 1.08001 * 119.96538 * 180.02562 * 17 16 15 32 32 H 1.08008 * 120.03335 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 16 3.8987 -6.0980 0.0012 14 7 1.5129 -7.2652 -0.0008 15 6 2.2076 -8.4743 0.1166 16 6 1.8467 -9.5627 -0.6671 17 6 2.5332 -10.7553 -0.5494 18 6 3.5798 -10.8671 0.3489 19 17 4.4452 -12.3655 0.4892 20 6 3.9421 -9.7837 1.1317 21 17 5.2560 -9.9273 2.2571 22 6 3.2586 -8.5877 1.0166 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.5428 -4.9307 -0.0011 29 1 0.5463 -7.2672 -0.0822 30 1 1.0300 -9.4766 -1.3684 31 1 2.2529 -11.6015 -1.1591 32 1 3.5408 -7.7429 1.6275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783758642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:11 Heat of formation + Delta-G solvation = 6.580847 kcal Electronic energy + Delta-G solvation = -18439.041843 eV Core-core repulsion = 15190.511481 eV Total energy + Delta-G solvation = -3248.530362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34886 -39.57462 -37.79997 -37.49880 -36.52012 -35.03087 -32.12799 -32.03647 -30.20043 -27.01675 -25.36935 -23.91953 -23.75473 -22.85666 -19.88515 -19.35174 -18.52123 -17.80620 -17.19288 -16.93027 -16.52910 -16.25326 -15.92223 -15.62641 -15.14273 -14.91832 -14.40308 -14.31182 -13.58115 -13.32380 -13.18820 -12.87179 -12.86525 -12.63352 -12.53043 -12.36332 -12.07663 -12.05187 -11.86962 -11.70178 -11.41957 -10.80457 -10.56708 -10.05435 -9.47687 -9.06203 -8.41498 -8.27018 -6.36011 -0.39876 0.08037 0.41126 0.76445 0.85391 1.15693 1.40580 1.41351 1.45820 1.56066 2.36120 2.41092 2.50653 3.09442 3.64289 3.95540 3.99370 4.13208 4.28029 4.43483 4.44226 4.73682 4.81488 4.87036 4.95440 5.01655 5.27607 5.45371 5.50950 5.51844 5.74107 5.87368 6.11809 6.29296 6.77617 7.33759 8.84782 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.002473 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.552975 B =11319.138425 C =11916.740559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.021 3.979 10 C 0.147 3.853 11 N -0.646 5.646 12 C 0.573 3.427 13 S -0.706 6.706 14 N -0.616 5.616 15 C 0.142 3.858 16 C -0.093 4.093 17 C -0.085 4.085 18 C -0.038 4.038 19 Cl -0.050 7.050 20 C -0.038 4.038 21 Cl -0.057 7.057 22 C -0.069 4.069 23 H 0.266 0.734 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.416 0.584 29 H 0.432 0.568 30 H 0.178 0.822 31 H 0.179 0.821 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 -24.936 -0.317 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.016 4.016 10 C 0.024 3.976 11 N -0.270 5.270 12 C 0.211 3.789 13 S -0.578 6.578 14 N -0.245 5.245 15 C 0.047 3.953 16 C -0.114 4.114 17 C -0.104 4.104 18 C -0.067 4.067 19 Cl -0.021 7.021 20 C -0.067 4.067 21 Cl -0.028 7.028 22 C -0.093 4.093 23 H 0.074 0.926 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.256 0.744 29 H 0.275 0.725 30 H 0.196 0.804 31 H 0.196 0.804 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.084 -24.753 -0.201 24.754 hybrid contribution -0.939 1.164 0.243 1.515 sum -0.855 -23.589 0.042 23.604 Atomic orbital electron populations 1.70032 1.07390 1.27947 1.51130 1.25780 0.95730 1.02879 0.94481 0.85464 0.79113 0.79120 0.77812 1.19023 1.20348 1.20381 1.21422 0.93693 0.91599 1.51281 0.92145 1.19189 0.94196 0.91479 0.96766 1.21739 0.94793 0.78607 1.02489 1.45294 1.11018 1.04318 1.66405 1.21852 0.94654 0.82291 0.80152 1.93697 0.92865 1.94563 1.76658 1.41930 1.10753 1.01291 1.70538 1.17383 0.95910 0.85006 0.96957 1.21293 1.01929 0.90653 0.97512 1.21117 0.92902 0.99359 0.97043 1.20989 0.97857 0.87581 1.00255 1.98386 1.75901 1.30594 1.97257 1.20484 0.94790 0.94259 0.97194 1.98380 1.46523 1.98003 1.59936 1.21124 0.94687 0.95526 0.97934 0.92550 0.96870 0.96944 0.91217 0.91250 0.74441 0.72487 0.80441 0.80407 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.82 13.29 21.45 0.28 -51.53 16 2 C 0.01 0.55 5.46 84.66 0.46 1.02 16 3 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.54 -28.53 9.11 25.60 0.23 -28.29 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C 0.15 5.50 5.07 86.38 0.44 5.94 16 11 N -0.65 -17.80 5.56 -350.17 -1.95 -19.75 16 12 C 0.57 15.68 7.75 179.05 1.39 17.06 16 13 S -0.71 -26.53 25.06 -56.49 -1.42 -27.94 16 14 N -0.62 -11.00 5.33 -189.97 -1.01 -12.02 16 15 C 0.14 2.72 5.91 38.15 0.23 2.94 16 16 C -0.09 -1.15 9.97 22.40 0.22 -0.93 16 17 C -0.08 -1.09 9.82 22.27 0.22 -0.87 16 18 C -0.04 -0.72 6.32 22.36 0.14 -0.58 16 19 Cl -0.05 -0.90 27.95 -2.72 -0.08 -0.97 16 20 C -0.04 -0.88 6.32 22.33 0.14 -0.74 16 21 Cl -0.06 -1.40 27.95 -2.72 -0.08 -1.48 16 22 C -0.07 -1.71 7.64 22.41 0.17 -1.54 16 23 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 24 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 25 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 2.82 7.99 -2.38 -0.02 2.80 16 27 H 0.07 2.81 7.99 -2.39 -0.02 2.79 16 28 H 0.42 8.81 8.49 -92.71 -0.79 8.02 16 29 H 0.43 4.01 8.84 -92.71 -0.82 3.19 16 30 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 31 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.14 4.15 6.27 -4.58 -0.03 4.12 16 Total: -1.00 -68.18 322.48 1.15 -67.04 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -0.43 Total: 7.12 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 3.79 Total: -4.86 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.67 Total: -83.29 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -26.53 SS G_CDS: -1.42 Total: -27.94 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.15 Total: -2.45 kcal Total: -68.18 1.15 -67.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783758642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.618 kcal (2) G-P(sol) polarization free energy of solvation -68.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds