Wall clock time and date at job start Tue Mar 31 2020 11:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37918 * 119.91942 * 2 1 4 4 C 1.39678 * 119.87714 * 180.02562 * 3 2 1 5 5 C 1.47619 * 120.13468 * 179.97438 * 4 3 2 6 6 O 1.21516 * 120.00184 * 359.97438 * 5 4 3 7 7 O 1.34736 * 119.99974 * 180.02562 * 5 4 3 8 8 C 1.34863 * 116.99995 * 180.02562 * 7 5 4 9 9 H 1.07994 * 119.99486 * 359.97438 * 8 7 5 10 10 C 1.38805 * 119.99564 * 179.97438 * 8 7 5 11 11 N 1.31417 * 120.00670 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99671 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46940 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47188 * 120.00049 * 12 10 8 15 15 H 1.48501 * 109.47184 * 240.00214 * 12 10 8 16 16 C 1.39707 * 119.72922 * 359.97438 * 4 3 2 17 17 C 1.37974 * 119.83753 * 0.02562 * 16 4 3 18 18 Cl 1.73598 * 119.94158 * 179.97438 * 17 16 4 19 19 C 1.38445 * 119.91912 * 179.72198 * 2 1 3 20 20 Br 1.89101 * 119.86451 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.47152 * 90.00308 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00409 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00390 * 1 2 3 24 24 H 1.07995 * 120.05974 * 0.02562 * 3 2 1 25 25 H 0.96995 * 119.99732 * 179.97438 * 11 10 8 26 26 H 1.08000 * 120.07948 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1954 0.0000 4 6 3.5917 1.1943 -0.0005 5 6 4.3338 2.4705 -0.0011 6 8 3.7295 3.5247 -0.0016 7 8 5.6811 2.4663 -0.0022 8 6 6.2971 3.6660 -0.0021 9 1 5.7116 4.5735 -0.0017 10 6 7.6835 3.7343 -0.0026 11 7 8.3958 2.6300 -0.0026 12 14 8.5367 5.3961 -0.0032 13 1 7.5173 6.4759 -0.0025 14 1 9.3859 5.5169 1.2089 15 1 9.3851 5.5165 -1.2161 16 6 4.2836 -0.0194 -0.0005 17 6 3.5839 -1.2085 -0.0005 18 17 4.4409 -2.7182 -0.0012 19 6 2.1976 -1.1999 0.0058 20 35 1.2459 -2.8340 0.0130 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.6546 2.1304 0.0004 25 1 9.3646 2.6778 -0.0034 26 1 5.3636 -0.0268 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792486938.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:46 Heat of formation + Delta-G solvation = -81.735217 kcal Electronic energy + Delta-G solvation = -15922.601713 eV Core-core repulsion = 12844.935277 eV Total energy + Delta-G solvation = -3077.666436 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 317.944 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.49571 -40.20761 -37.77654 -37.29092 -34.62689 -34.21905 -33.07806 -30.83909 -28.33135 -27.54537 -25.06744 -23.24989 -21.78425 -19.97160 -18.93873 -17.73839 -17.03420 -16.74053 -16.72308 -16.21405 -16.02133 -15.38056 -14.72264 -14.39884 -13.87287 -13.69483 -13.42635 -13.30768 -13.03226 -12.76557 -12.54666 -12.37154 -12.26933 -12.20107 -12.04772 -12.01905 -11.26218 -11.08481 -10.76231 -9.95245 -9.93574 -8.62004 -6.38670 -0.73371 -0.12771 0.24303 0.86044 1.26805 1.33827 1.52644 1.53888 2.03170 2.37872 2.54515 2.96074 3.39080 3.73640 3.88551 3.96179 4.18298 4.33913 4.58064 4.72508 4.77148 5.02103 5.06277 5.09340 5.20679 5.39172 5.73614 6.49864 6.82139 7.61523 8.58066 Molecular weight = 317.94amu Principal moments of inertia in cm(-1) A = 0.028739 B = 0.003891 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.057300 B = 7194.324484 C = 8153.220581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.044 4.044 3 C -0.057 4.057 4 C -0.080 4.080 5 C 0.429 3.571 6 O -0.570 6.570 7 O -0.227 6.227 8 C -0.418 4.418 9 H 0.088 0.912 10 C -0.001 4.001 11 N -0.892 5.892 12 Si 1.020 2.980 13 H -0.262 1.262 14 H -0.259 1.259 15 H -0.259 1.259 16 C -0.073 4.073 17 C -0.020 4.020 18 Cl -0.036 7.036 19 C -0.077 4.077 20 Br 0.001 6.999 21 H 0.099 0.901 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.156 0.844 25 H 0.282 0.718 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 -12.283 -0.019 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.046 4.046 3 C -0.077 4.077 4 C -0.082 4.082 5 C 0.279 3.721 6 O -0.470 6.470 7 O -0.135 6.135 8 C -0.493 4.493 9 H 0.105 0.895 10 C -0.202 4.202 11 N -0.528 5.528 12 Si 0.838 3.162 13 H -0.186 1.186 14 H -0.183 1.183 15 H -0.183 1.183 16 C -0.093 4.093 17 C -0.049 4.049 18 Cl -0.006 7.006 19 C -0.158 4.158 20 Br 0.087 6.913 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.108 0.892 24 H 0.174 0.826 25 H 0.092 0.908 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.929 -12.876 -0.015 19.715 hybrid contribution 1.175 0.968 -0.007 1.522 sum -13.754 -11.908 -0.022 18.193 Atomic orbital electron populations 1.21132 0.86093 1.05417 1.05018 1.19988 0.98887 0.89037 0.96725 1.21336 0.90988 0.99597 0.95744 1.19277 0.94245 0.89954 1.04684 1.21387 0.82519 0.89538 0.78668 1.90599 1.69864 1.34274 1.52259 1.83909 1.18577 1.35473 1.75501 1.21602 0.90323 0.82869 1.54497 0.89462 1.26611 0.95116 1.04165 0.94355 1.70056 1.07714 1.29746 1.45297 0.84537 0.77876 0.74440 0.79333 1.18594 1.18346 1.18333 1.21269 1.01228 0.89666 0.97153 1.20587 0.91190 0.88221 1.04914 1.98382 1.76744 1.28886 1.96620 1.22075 0.92037 0.94325 1.07372 1.96696 1.73211 1.24201 1.97212 0.88248 0.88838 0.89173 0.82606 0.90838 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.55 71.24 0.68 -1.28 15 2 C -0.04 -1.10 5.88 -19.89 -0.12 -1.22 15 3 C -0.06 -1.81 9.24 22.54 0.21 -1.60 15 4 C -0.08 -3.19 5.87 -20.10 -0.12 -3.31 15 5 C 0.43 22.12 7.83 70.30 0.55 22.67 15 6 O -0.57 -31.18 15.59 19.78 0.31 -30.87 15 7 O -0.23 -13.34 8.99 11.21 0.10 -13.24 15 8 C -0.42 -25.00 9.65 67.96 0.66 -24.35 15 9 H 0.09 5.27 6.86 -2.91 -0.02 5.25 15 10 C 0.00 -0.04 5.50 84.89 0.47 0.42 15 11 N -0.89 -51.52 13.67 21.63 0.30 -51.23 15 12 Si 1.02 42.36 29.55 68.60 2.03 44.39 15 13 H -0.26 -10.69 7.11 99.48 0.71 -9.99 15 14 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 15 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 16 C -0.07 -2.73 9.39 22.56 0.21 -2.52 15 17 C -0.02 -0.62 6.31 22.30 0.14 -0.48 15 18 Cl -0.04 -0.99 27.72 -2.72 -0.08 -1.07 15 19 C -0.08 -2.04 6.23 22.41 0.14 -1.90 15 20 Br 0.00 0.01 30.56 -20.37 -0.62 -0.61 15 21 H 0.10 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.09 1.29 8.08 -2.39 -0.02 1.27 15 23 H 0.09 1.29 6.61 -2.38 -0.02 1.28 15 24 H 0.16 4.65 7.65 -2.91 -0.02 4.63 15 25 H 0.28 14.68 8.31 -92.71 -0.77 13.91 15 26 H 0.14 5.72 7.61 -2.91 -0.02 5.70 15 Total: -1.00 -67.59 276.13 6.09 -61.50 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.23 Total: 4.68 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 2.82 Total: -13.57 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.30 Total: -51.23 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: 0.41 Total: -44.11 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.62 Total: -0.61 kcal Total: -67.59 6.09 -61.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792486938.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.230 kcal (2) G-P(sol) polarization free energy of solvation -67.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds