Wall clock time and date at job start Tue Mar 31 2020 12:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99831 * 2 1 4 4 H 1.48501 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47318 * 300.00035 * 3 2 1 6 6 H 1.48501 * 109.47404 * 59.99660 * 3 2 1 7 7 C 1.37872 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46975 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.46997 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54415 * 68.37130 * 11 10 9 13 13 O 1.42098 * 110.54228 * 291.62139 * 11 10 9 14 14 N 1.65601 * 104.45109 * 179.97438 * 11 10 9 15 15 C 1.34778 * 119.99983 * 64.99981 * 14 11 10 16 16 O 1.21524 * 119.99718 * 359.97438 * 15 14 11 17 17 C 1.48082 * 120.00009 * 180.02562 * 15 14 11 18 18 N 1.32778 * 119.73679 * 359.97438 * 17 15 14 19 19 C 1.31462 * 121.65356 * 180.02562 * 18 17 15 20 20 C 1.38650 * 120.94089 * 0.02562 * 19 18 17 21 21 C 1.38512 * 119.37361 * 0.27958 * 20 19 18 22 22 C 1.38800 * 118.47665 * 359.43086 * 21 20 19 23 23 Cl 1.73603 * 120.48816 * 180.26404 * 22 21 20 24 24 H 0.97005 * 120.00313 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47380 * 59.99720 * 9 7 2 26 26 H 1.09000 * 109.46968 * 299.99659 * 9 7 2 27 27 H 1.08995 * 109.47307 * 59.99660 * 10 9 7 28 28 H 1.09000 * 109.46982 * 299.99635 * 10 9 7 29 29 H 0.96994 * 119.99918 * 245.00417 * 14 11 10 30 30 H 1.07995 * 119.52996 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.30915 * 179.97438 * 20 19 18 32 32 H 1.08003 * 120.75888 * 179.72452 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 16 1.3383 -5.2330 0.0026 12 8 0.6648 -5.4206 -1.2345 13 8 0.6639 -5.4188 1.2394 14 7 2.5205 -6.3927 0.0032 15 6 3.3469 -6.5119 1.0612 16 8 3.2249 -5.7681 2.0144 17 6 4.4044 -7.5486 1.0615 18 7 4.5334 -8.3581 0.0171 19 6 5.4583 -9.2915 -0.0223 20 6 6.3396 -9.4667 1.0337 21 6 6.2375 -8.6487 2.1467 22 6 5.2559 -7.6674 2.1591 23 17 5.0859 -6.6088 3.5244 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8713 -3.6038 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 2.6182 -6.9861 -0.7578 30 1 5.5327 -9.9309 -0.8894 31 1 7.0954 -10.2371 0.9908 32 1 6.9095 -8.7684 2.9838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797031632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:41 Heat of formation + Delta-G solvation = -72.238707 kcal Electronic energy + Delta-G solvation = -21737.910591 eV Core-core repulsion = 18045.253192 eV Total energy + Delta-G solvation = -3692.657399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14894 -39.42469 -36.90664 -36.66417 -35.59200 -34.55090 -33.87331 -32.98460 -31.71755 -31.15398 -25.75648 -25.48896 -24.10184 -22.14639 -21.58164 -19.39874 -18.89092 -17.70535 -17.30691 -16.76481 -16.39831 -15.98635 -15.88247 -15.25730 -15.00820 -14.73250 -14.51047 -14.14680 -13.92074 -13.39911 -12.97361 -12.54930 -12.43182 -12.35258 -11.77509 -11.70352 -11.62746 -11.55309 -11.07221 -10.97261 -10.84144 -10.69334 -10.42532 -10.36403 -10.32281 -9.86511 -9.67662 -9.48790 -9.14393 -8.47668 -6.09708 -4.14847 -0.04715 0.48336 0.51730 1.67808 2.11764 2.65085 3.20806 3.28254 3.35285 3.39169 3.44588 3.96956 4.12427 4.14338 4.28208 4.39911 4.58086 4.66849 4.72468 4.96778 5.22807 5.25776 5.33618 5.63158 5.75292 5.79541 6.48158 6.61549 7.05667 7.31517 7.37779 7.38624 7.83760 8.19529 8.88328 9.49583 11.01471 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.003730 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.091453 B = 7505.328882 C = 8265.458948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.575 4.575 11 S 2.565 3.435 12 O -0.951 6.951 13 O -0.936 6.936 14 N -1.043 6.043 15 C 0.589 3.411 16 O -0.460 6.460 17 C 0.083 3.917 18 N -0.439 5.439 19 C 0.101 3.899 20 C -0.132 4.132 21 C -0.075 4.075 22 C -0.036 4.036 23 Cl -0.005 7.005 24 H 0.264 0.736 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.436 0.564 30 H 0.174 0.826 31 H 0.152 0.848 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.641 -21.651 1.523 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.665 3.335 12 O -0.941 6.941 13 O -0.926 6.926 14 N -0.804 5.804 15 C 0.373 3.627 16 O -0.328 6.328 17 C -0.057 4.057 18 N -0.151 5.151 19 C -0.059 4.059 20 C -0.153 4.153 21 C -0.102 4.102 22 C -0.066 4.066 23 Cl 0.024 6.976 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.272 0.728 30 H 0.191 0.809 31 H 0.170 0.830 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.836 -20.992 1.692 25.198 hybrid contribution 1.704 0.698 0.301 1.866 sum 15.540 -20.294 1.993 25.638 Atomic orbital electron populations 1.69965 1.06098 1.27087 1.49698 1.25061 0.94986 0.99532 0.94908 0.86397 0.79945 0.83111 0.77732 1.19633 1.20816 1.20775 1.21017 0.93149 0.89552 1.51983 0.91899 1.19003 0.92629 0.90293 0.99082 1.30347 1.13741 1.16004 1.10895 1.06789 0.74921 0.77206 0.74591 1.93594 1.70298 1.85233 1.44991 1.93602 1.70152 1.84348 1.44481 1.55270 1.48249 1.50240 1.26658 1.17637 0.80330 0.82905 0.81876 1.91095 1.68523 1.41367 1.31847 1.20873 0.96800 0.97229 0.90834 1.67639 1.20221 1.03412 1.23788 1.22988 0.89972 0.94333 0.98610 1.22468 0.99970 0.99467 0.93348 1.21657 0.96281 0.92687 0.99546 1.22116 0.97237 0.95485 0.91795 1.98475 1.96612 1.62778 1.39720 0.92583 0.94700 0.94504 0.84969 0.85939 0.72757 0.80926 0.83000 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.69 7.74 -52.48 -0.41 1.29 16 9 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 10 C -0.58 -11.72 5.82 37.16 0.22 -11.51 16 11 S 2.56 48.81 5.11 -107.50 -0.55 48.26 16 12 O -0.95 -19.55 18.08 -57.54 -1.04 -20.59 16 13 O -0.94 -20.95 17.04 -64.78 -1.10 -22.05 16 14 N -1.04 -15.29 5.59 30.58 0.17 -15.12 16 15 C 0.59 8.93 7.54 -12.22 -0.09 8.84 16 16 O -0.46 -8.21 12.04 -11.76 -0.14 -8.35 16 17 C 0.08 1.00 6.75 -82.98 -0.56 0.44 16 18 N -0.44 -4.35 9.54 -9.78 -0.09 -4.44 16 19 C 0.10 0.62 11.18 -17.56 -0.20 0.42 16 20 C -0.13 -0.61 10.11 -39.33 -0.40 -1.01 16 21 C -0.08 -0.49 9.98 -39.27 -0.39 -0.88 16 22 C -0.04 -0.38 6.37 -38.93 -0.25 -0.63 16 23 Cl -0.01 -0.07 26.04 -51.86 -1.35 -1.42 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.13 2.62 7.19 -51.93 -0.37 2.25 16 28 H 0.12 2.17 8.14 -51.92 -0.42 1.74 16 29 H 0.44 5.09 8.12 -34.47 -0.28 4.81 16 30 H 0.17 0.46 8.06 -52.49 -0.42 0.03 16 31 H 0.15 0.16 8.06 -52.49 -0.42 -0.27 16 32 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -37.13 314.84 -8.60 -45.73 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -2.73 Total: -0.20 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -2.22 Total: -17.06 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.81 Total: -45.61 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -2.29 Total: -51.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 48.81 SS G_CDS: -0.55 Total: 48.26 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.35 Total: -1.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.13 -8.60 -45.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797031632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.508 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds