Wall clock time and date at job start Tue Mar 31 2020 12:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99831 * 2 1 4 4 H 1.48501 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47318 * 300.00035 * 3 2 1 6 6 H 1.48501 * 109.47404 * 59.99660 * 3 2 1 7 7 C 1.37872 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46975 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.46997 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54415 * 68.37130 * 11 10 9 13 13 O 1.42098 * 110.54228 * 291.62139 * 11 10 9 14 14 N 1.65601 * 104.45109 * 179.97438 * 11 10 9 15 15 C 1.34778 * 119.99983 * 64.99981 * 14 11 10 16 16 O 1.21524 * 119.99718 * 359.97438 * 15 14 11 17 17 C 1.48082 * 120.00009 * 180.02562 * 15 14 11 18 18 N 1.32778 * 119.73679 * 359.97438 * 17 15 14 19 19 C 1.31462 * 121.65356 * 180.02562 * 18 17 15 20 20 C 1.38650 * 120.94089 * 0.02562 * 19 18 17 21 21 C 1.38512 * 119.37361 * 0.27958 * 20 19 18 22 22 C 1.38800 * 118.47665 * 359.43086 * 21 20 19 23 23 Cl 1.73603 * 120.48816 * 180.26404 * 22 21 20 24 24 H 0.97005 * 120.00313 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47380 * 59.99720 * 9 7 2 26 26 H 1.09000 * 109.46968 * 299.99659 * 9 7 2 27 27 H 1.08995 * 109.47307 * 59.99660 * 10 9 7 28 28 H 1.09000 * 109.46982 * 299.99635 * 10 9 7 29 29 H 0.96994 * 119.99918 * 245.00417 * 14 11 10 30 30 H 1.07995 * 119.52996 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.30915 * 179.97438 * 20 19 18 32 32 H 1.08003 * 120.75888 * 179.72452 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 16 1.3383 -5.2330 0.0026 12 8 0.6648 -5.4206 -1.2345 13 8 0.6639 -5.4188 1.2394 14 7 2.5205 -6.3927 0.0032 15 6 3.3469 -6.5119 1.0612 16 8 3.2249 -5.7681 2.0144 17 6 4.4044 -7.5486 1.0615 18 7 4.5334 -8.3581 0.0171 19 6 5.4583 -9.2915 -0.0223 20 6 6.3396 -9.4667 1.0337 21 6 6.2375 -8.6487 2.1467 22 6 5.2559 -7.6674 2.1591 23 17 5.0859 -6.6088 3.5244 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8713 -3.6038 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 2.6182 -6.9861 -0.7578 30 1 5.5327 -9.9309 -0.8894 31 1 7.0954 -10.2371 0.9908 32 1 6.9095 -8.7684 2.9838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797031632.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:41 Heat of formation + Delta-G solvation = -101.507045 kcal Electronic energy + Delta-G solvation = -21739.179761 eV Core-core repulsion = 18045.253192 eV Total energy + Delta-G solvation = -3693.926569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98873 -40.40123 -38.32953 -37.70924 -37.27838 -35.98563 -35.73466 -33.61081 -33.20108 -32.37548 -27.68130 -26.45380 -24.69266 -23.70116 -22.99902 -20.78656 -19.99034 -19.25497 -18.47234 -17.95391 -17.45234 -17.32079 -16.96195 -16.56986 -16.54188 -16.40620 -15.56146 -15.28788 -14.97427 -14.51420 -14.45563 -13.91874 -13.77891 -13.48133 -13.41835 -13.30691 -13.14593 -12.97953 -12.86160 -12.64442 -12.35386 -12.25293 -12.04930 -11.75684 -11.51799 -11.10739 -10.96457 -10.68121 -10.66379 -10.18835 -8.27823 -6.41832 -1.07760 -0.75786 -0.05074 0.93010 1.11611 1.32510 1.39805 1.41096 1.54482 2.35617 2.45884 2.54783 2.62537 3.04497 3.06172 3.35264 3.58770 3.74156 3.84579 3.98104 4.00488 4.12093 4.33300 4.66329 4.75939 4.91561 5.20753 5.21892 5.37145 5.51458 5.65954 6.02669 6.15032 6.56311 6.70519 7.27966 8.84905 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.003730 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.091453 B = 7505.328882 C = 8265.458948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.023 3.977 10 C -0.575 4.575 11 S 2.598 3.402 12 O -0.967 6.967 13 O -0.973 6.973 14 N -1.027 6.027 15 C 0.583 3.417 16 O -0.495 6.495 17 C 0.053 3.947 18 N -0.457 5.457 19 C 0.102 3.898 20 C -0.101 4.101 21 C -0.074 4.074 22 C -0.048 4.048 23 Cl -0.035 7.035 24 H 0.268 0.732 25 H 0.017 0.983 26 H 0.007 0.993 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.450 0.550 30 H 0.213 0.787 31 H 0.202 0.798 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.018 -23.713 0.647 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.092 0.908 9 C -0.016 4.016 10 C -0.709 4.709 11 S 2.697 3.303 12 O -0.957 6.957 13 O -0.963 6.963 14 N -0.793 5.793 15 C 0.369 3.631 16 O -0.365 6.365 17 C -0.086 4.086 18 N -0.169 5.169 19 C -0.059 4.059 20 C -0.120 4.120 21 C -0.100 4.100 22 C -0.079 4.079 23 Cl -0.006 7.006 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.025 0.975 27 H 0.154 0.846 28 H 0.169 0.831 29 H 0.290 0.710 30 H 0.229 0.771 31 H 0.219 0.781 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 17.216 -23.058 0.796 28.787 hybrid contribution 0.770 1.093 0.513 1.432 sum 17.986 -21.965 1.309 28.420 Atomic orbital electron populations 1.70102 1.07994 1.28366 1.50697 1.26109 0.95917 1.03833 0.94236 0.85234 0.79027 0.77854 0.77945 1.18156 1.19921 1.20357 1.21484 0.93907 0.90656 1.51806 0.90844 1.18848 0.93407 0.92558 0.96811 1.30226 1.12901 1.15207 1.12550 1.05494 0.74626 0.76823 0.73314 1.93563 1.71229 1.85484 1.45439 1.93551 1.71631 1.84891 1.46201 1.54739 1.47530 1.49367 1.27617 1.18280 0.80582 0.83276 0.80923 1.91073 1.69520 1.43018 1.32938 1.20364 0.97217 0.98185 0.92802 1.67598 1.21957 1.04259 1.23119 1.23799 0.88677 0.93161 1.00279 1.23046 0.99271 0.98567 0.91136 1.22083 0.95273 0.91416 1.01259 1.22333 0.98560 0.96401 0.90589 1.98461 1.96848 1.64118 1.41180 0.92266 0.96503 0.97457 0.84559 0.83111 0.70966 0.77051 0.78068 0.80000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.98 44.47 29.54 68.60 2.03 46.49 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.07 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.02 1.25 4.98 29.85 0.15 1.40 16 10 C -0.58 -24.10 5.82 71.98 0.42 -23.68 16 11 S 2.60 101.91 5.11 -56.49 -0.29 101.62 16 12 O -0.97 -40.45 18.08 -127.65 -2.31 -42.76 16 13 O -0.97 -45.55 17.04 -120.73 -2.06 -47.61 16 14 N -1.03 -30.29 5.59 -175.44 -0.98 -31.27 16 15 C 0.58 17.95 7.54 86.86 0.66 18.60 16 16 O -0.49 -18.37 12.04 12.56 0.15 -18.22 16 17 C 0.05 1.23 6.75 41.90 0.28 1.51 16 18 N -0.46 -7.96 9.54 -184.84 -1.76 -9.73 16 19 C 0.10 0.78 11.18 84.85 0.95 1.73 16 20 C -0.10 -0.38 10.11 22.43 0.23 -0.15 16 21 C -0.07 -0.71 9.98 22.47 0.22 -0.48 16 22 C -0.05 -0.95 6.37 22.69 0.14 -0.81 16 23 Cl -0.04 -0.88 26.04 -2.72 -0.07 -0.95 16 24 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.14 5.60 7.19 -2.39 -0.02 5.58 16 28 H 0.15 5.32 8.14 -2.39 -0.02 5.30 16 29 H 0.45 10.28 8.12 -96.75 -0.79 9.50 16 30 H 0.21 -0.12 8.06 -2.91 -0.02 -0.14 16 31 H 0.20 -1.14 8.06 -2.91 -0.02 -1.17 16 32 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -85.09 314.84 -0.86 -85.95 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.40 Total: 6.30 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 3.75 Total: -32.40 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -2.46 Total: -98.43 kcal Atomic # 8 Polarization: -104.37 SS G_CDS: -4.21 Total: -108.59 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 101.91 SS G_CDS: -0.29 Total: 101.62 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.07 Total: -0.95 kcal Total: -85.09 -0.86 -85.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797031632.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.553 kcal (2) G-P(sol) polarization free energy of solvation -85.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds