Wall clock time and date at job start Tue Mar 31 2020 12:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86804 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47119 * 239.99972 * 3 2 1 5 5 H 1.48504 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46960 * 119.99479 * 3 2 1 7 7 C 1.38755 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00009 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.34315 * 117.00100 * 179.97438 * 9 7 2 11 11 O 1.21201 * 119.99712 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00083 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47055 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 10 15 15 O 1.42895 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.35951 * 116.99921 * 179.97438 * 15 14 13 17 17 C 1.38697 * 120.04454 * 359.73070 * 16 15 14 18 18 C 1.38154 * 119.96855 * 179.67684 * 17 16 15 19 19 C 1.38379 * 120.06092 * 0.61563 * 18 17 16 20 20 Cl 1.73601 * 119.95404 * 179.70413 * 19 18 17 21 21 C 1.38347 * 120.09449 * 359.67915 * 19 18 17 22 22 C 1.38256 * 120.02933 * 0.02562 * 21 19 18 23 23 Cl 1.73597 * 120.03271 * 179.97438 * 22 21 19 24 24 H 0.96994 * 119.99963 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99586 * 12 10 9 26 26 H 1.09004 * 109.47043 * 299.99953 * 12 10 9 27 27 H 1.09001 * 109.46832 * 59.99966 * 13 12 10 28 28 H 1.08993 * 109.47194 * 299.99487 * 13 12 10 29 29 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 30 30 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 31 31 H 1.07999 * 120.01555 * 359.97164 * 17 16 15 32 32 H 1.08000 * 119.96967 * 180.32127 * 18 17 16 33 33 H 1.07999 * 119.98465 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 3.1023 1.6964 -1.2125 5 1 1.2835 2.7465 -0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0883 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0016 10 6 2.0652 -3.4966 0.0015 11 8 3.2755 -3.4331 0.0010 12 6 1.3810 -4.8393 0.0021 13 6 2.4347 -5.9485 0.0012 14 6 1.7401 -7.3118 0.0024 15 8 2.7243 -8.3478 0.0010 16 6 2.2711 -9.6296 0.0024 17 6 0.9077 -9.8841 0.0107 18 6 0.4489 -11.1872 0.0053 19 6 1.3484 -12.2388 0.0045 20 17 0.7688 -13.8752 0.0056 21 6 2.7089 -11.9879 0.0025 22 6 3.1723 -10.6853 0.0017 23 17 4.8795 -10.3704 -0.0003 24 1 -0.4850 0.8400 -0.0004 25 1 0.7578 -4.9299 -0.8876 26 1 0.7586 -4.9295 0.8924 27 1 3.0582 -5.8580 0.8907 28 1 3.0567 -5.8581 -0.8892 29 1 1.1183 -7.4020 0.8931 30 1 1.1163 -7.4025 -0.8868 31 1 0.2051 -9.0640 0.0165 32 1 -0.6127 -11.3854 0.0065 33 1 3.4094 -12.8100 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798170233.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:21 Heat of formation + Delta-G solvation = -117.273871 kcal Electronic energy + Delta-G solvation = -20398.246730 eV Core-core repulsion = 16669.300003 eV Total energy + Delta-G solvation = -3728.946727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.62525 -39.06383 -38.21442 -36.94200 -36.41618 -35.48185 -33.52559 -32.15393 -31.43086 -30.11198 -27.62434 -25.26174 -23.71350 -22.86152 -21.68667 -19.83245 -18.68952 -17.75031 -17.19544 -16.80890 -16.59320 -16.28948 -15.25053 -15.18159 -14.67004 -14.49499 -14.36582 -14.18032 -13.82022 -13.27501 -12.95330 -12.55849 -12.49370 -12.25605 -11.92603 -11.75511 -11.59411 -11.39768 -11.21153 -11.15539 -11.05503 -11.03464 -10.57993 -10.47461 -10.38142 -9.83262 -9.42700 -9.06820 -8.59391 -8.50885 -6.42996 -4.10965 0.58229 0.67971 1.54025 1.98189 2.73522 3.00879 3.11794 3.17972 3.22030 3.50808 3.93275 4.20958 4.36719 4.49443 4.56058 4.82347 4.84334 4.96597 5.09638 5.09849 5.19869 5.24067 5.39547 5.53010 5.59002 5.67121 5.81243 5.95173 6.20607 6.37306 6.75541 6.94547 7.37862 7.93682 8.69358 9.06013 9.82966 10.74991 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.030220 B = 0.002058 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.318784 B =13603.264763 C =14503.832577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.383 4.383 8 H 0.095 0.905 9 O -0.215 6.215 10 C 0.397 3.603 11 O -0.556 6.556 12 C -0.099 4.099 13 C -0.103 4.103 14 C 0.057 3.943 15 O -0.295 6.295 16 C 0.154 3.846 17 C -0.188 4.188 18 C -0.062 4.062 19 C -0.069 4.069 20 Cl -0.063 7.063 21 C -0.064 4.064 22 C -0.064 4.064 23 Cl -0.042 7.042 24 H 0.270 0.730 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 -25.396 0.015 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.113 0.887 9 O -0.122 6.122 10 C 0.243 3.757 11 O -0.453 6.453 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.018 4.018 15 O -0.207 6.207 16 C 0.106 3.894 17 C -0.207 4.207 18 C -0.081 4.081 19 C -0.096 4.096 20 Cl -0.035 7.035 21 C -0.083 4.083 22 C -0.092 4.092 23 Cl -0.013 7.013 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.039 -25.218 0.015 25.218 hybrid contribution 0.204 0.685 -0.001 0.715 sum 0.243 -24.533 0.014 24.534 Atomic orbital electron populations 1.69979 1.05993 1.27800 1.46589 1.25338 0.95824 0.98884 0.96189 0.85737 0.78624 0.79412 0.79366 1.19481 1.20384 1.19477 1.21173 0.92353 0.79867 1.52504 0.88735 1.83868 1.39390 1.13412 1.75568 1.23005 0.86689 0.87234 0.78768 1.90569 1.15742 1.88124 1.50867 1.20903 0.98231 0.89874 1.04743 1.21247 0.98238 0.88996 1.05594 1.23055 0.90677 0.86183 1.01895 1.86215 1.36182 1.11305 1.87014 1.18800 0.91512 0.84784 0.94308 1.21275 0.93822 0.98093 1.07548 1.20959 1.00174 0.90568 0.96413 1.20571 0.93069 0.86377 1.09589 1.98378 1.88753 1.19170 1.97164 1.20736 0.94314 0.95063 0.98224 1.20018 0.86056 0.91945 1.11171 1.98399 1.10052 1.95933 1.96940 0.92028 0.88824 0.88820 0.89847 0.89841 0.91273 0.91280 0.83265 0.83977 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.18 13.67 55.48 0.76 -24.42 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.38 -11.25 9.65 30.92 0.30 -10.96 16 8 H 0.10 2.80 6.86 -52.48 -0.36 2.44 16 9 O -0.22 -6.05 9.75 -20.71 -0.20 -6.26 16 10 C 0.40 9.42 7.91 36.00 0.28 9.70 16 11 O -0.56 -14.60 15.22 -19.04 -0.29 -14.89 16 12 C -0.10 -1.60 5.81 -27.89 -0.16 -1.76 16 13 C -0.10 -1.46 4.87 -26.73 -0.13 -1.59 16 14 C 0.06 0.60 4.74 37.16 0.18 0.77 16 15 O -0.29 -3.58 9.60 -19.59 -0.19 -3.77 16 16 C 0.15 1.64 6.68 -39.20 -0.26 1.38 16 17 C -0.19 -1.58 9.04 -39.44 -0.36 -1.94 16 18 C -0.06 -0.47 9.82 -39.56 -0.39 -0.86 16 19 C -0.07 -0.57 6.32 -39.49 -0.25 -0.82 16 20 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.98 16 21 C -0.06 -0.56 9.61 -39.53 -0.38 -0.94 16 22 C -0.06 -0.67 6.33 -39.37 -0.25 -0.92 16 23 Cl -0.04 -0.46 28.50 -51.86 -1.48 -1.94 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.08 1.29 8.10 -51.93 -0.42 0.86 16 28 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.07 0.61 7.65 -51.93 -0.40 0.21 16 30 H 0.07 0.61 7.68 -51.93 -0.40 0.21 16 31 H 0.15 0.98 6.30 -52.49 -0.33 0.65 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -33.15 328.21 -7.65 -40.80 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.15 Total: -1.82 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.52 Total: -6.86 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.76 Total: -24.42 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.68 Total: -24.91 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.98 Total: -3.93 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.15 -7.65 -40.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798170233.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.476 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds