Wall clock time and date at job start Tue Mar 31 2020 12:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86804 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47119 * 239.99972 * 3 2 1 5 5 H 1.48504 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46960 * 119.99479 * 3 2 1 7 7 C 1.38755 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00009 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.34315 * 117.00100 * 179.97438 * 9 7 2 11 11 O 1.21201 * 119.99712 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00083 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47055 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 10 15 15 O 1.42895 * 109.47036 * 179.97438 * 14 13 12 16 16 C 1.35951 * 116.99921 * 179.97438 * 15 14 13 17 17 C 1.38697 * 120.04454 * 359.73070 * 16 15 14 18 18 C 1.38154 * 119.96855 * 179.67684 * 17 16 15 19 19 C 1.38379 * 120.06092 * 0.61563 * 18 17 16 20 20 Cl 1.73601 * 119.95404 * 179.70413 * 19 18 17 21 21 C 1.38347 * 120.09449 * 359.67915 * 19 18 17 22 22 C 1.38256 * 120.02933 * 0.02562 * 21 19 18 23 23 Cl 1.73597 * 120.03271 * 179.97438 * 22 21 19 24 24 H 0.96994 * 119.99963 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99586 * 12 10 9 26 26 H 1.09004 * 109.47043 * 299.99953 * 12 10 9 27 27 H 1.09001 * 109.46832 * 59.99966 * 13 12 10 28 28 H 1.08993 * 109.47194 * 299.99487 * 13 12 10 29 29 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 30 30 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 31 31 H 1.07999 * 120.01555 * 359.97164 * 17 16 15 32 32 H 1.08000 * 119.96967 * 180.32127 * 18 17 16 33 33 H 1.07999 * 119.98465 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 3.1023 1.6964 -1.2125 5 1 1.2835 2.7465 -0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0082 -1.2017 0.0005 8 1 3.0883 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0016 10 6 2.0652 -3.4966 0.0015 11 8 3.2755 -3.4331 0.0010 12 6 1.3810 -4.8393 0.0021 13 6 2.4347 -5.9485 0.0012 14 6 1.7401 -7.3118 0.0024 15 8 2.7243 -8.3478 0.0010 16 6 2.2711 -9.6296 0.0024 17 6 0.9077 -9.8841 0.0107 18 6 0.4489 -11.1872 0.0053 19 6 1.3484 -12.2388 0.0045 20 17 0.7688 -13.8752 0.0056 21 6 2.7089 -11.9879 0.0025 22 6 3.1723 -10.6853 0.0017 23 17 4.8795 -10.3704 -0.0003 24 1 -0.4850 0.8400 -0.0004 25 1 0.7578 -4.9299 -0.8876 26 1 0.7586 -4.9295 0.8924 27 1 3.0582 -5.8580 0.8907 28 1 3.0567 -5.8581 -0.8892 29 1 1.1183 -7.4020 0.8931 30 1 1.1163 -7.4025 -0.8868 31 1 0.2051 -9.0640 0.0165 32 1 -0.6127 -11.3854 0.0065 33 1 3.4094 -12.8100 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798170233.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:20 Heat of formation + Delta-G solvation = -136.129650 kcal Electronic energy + Delta-G solvation = -20399.064378 eV Core-core repulsion = 16669.300003 eV Total energy + Delta-G solvation = -3729.764375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.38029 -40.98355 -38.98504 -37.67645 -37.43957 -37.07487 -34.83826 -34.28020 -32.08331 -30.88653 -28.90098 -27.13339 -24.65104 -23.64081 -22.72339 -21.42599 -19.87046 -19.49033 -18.54221 -17.73747 -17.56352 -17.37812 -16.72160 -16.48347 -16.21437 -15.86499 -15.24032 -15.16857 -14.84996 -14.34425 -14.22812 -13.70380 -13.56928 -13.36668 -13.17704 -13.11434 -12.87409 -12.61484 -12.32033 -12.24300 -12.16584 -11.99465 -11.93037 -11.92041 -11.85378 -11.48065 -11.05124 -10.69454 -10.08806 -9.22144 -8.53954 -6.33516 -0.06975 0.00732 0.86359 1.27872 1.32676 1.34410 1.49635 1.66745 1.88349 2.17861 2.35172 2.87397 2.97477 3.59776 3.71069 3.90894 3.93011 3.97376 4.04267 4.21412 4.37836 4.42967 4.51510 4.58230 4.63661 4.88369 4.99138 5.02675 5.03036 5.18707 5.22102 5.34790 5.83946 6.18273 6.69632 6.91700 7.77446 8.66384 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.030220 B = 0.002058 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.318784 B =13603.264763 C =14503.832577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.004 4.004 3 Si 1.015 2.985 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.422 4.422 8 H 0.079 0.921 9 O -0.245 6.245 10 C 0.392 3.608 11 O -0.587 6.587 12 C -0.087 4.087 13 C -0.096 4.096 14 C 0.062 3.938 15 O -0.319 6.319 16 C 0.135 3.865 17 C -0.183 4.183 18 C -0.058 4.058 19 C -0.072 4.072 20 Cl -0.057 7.057 21 C -0.065 4.065 22 C -0.080 4.080 23 Cl -0.059 7.059 24 H 0.279 0.721 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -26.136 0.020 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.204 4.204 3 Si 0.834 3.166 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.240 3.760 11 O -0.486 6.486 12 C -0.124 4.124 13 C -0.134 4.134 14 C -0.012 4.012 15 O -0.232 6.232 16 C 0.088 3.912 17 C -0.202 4.202 18 C -0.076 4.076 19 C -0.099 4.099 20 Cl -0.028 7.028 21 C -0.085 4.085 22 C -0.108 4.108 23 Cl -0.030 7.030 24 H 0.088 0.912 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.448 -25.994 0.020 26.034 hybrid contribution 0.656 0.740 -0.003 0.989 sum -0.792 -25.254 0.017 25.266 Atomic orbital electron populations 1.70052 1.07500 1.29414 1.46925 1.26490 0.96904 1.02260 0.94767 0.84722 0.77636 0.74566 0.79685 1.18763 1.18308 1.18754 1.21332 0.92060 0.81383 1.55016 0.90332 1.83892 1.40327 1.14241 1.76912 1.24584 0.86735 0.88655 0.76014 1.90540 1.17571 1.88772 1.51687 1.21041 0.98580 0.85339 1.07462 1.21101 0.97605 0.90982 1.03732 1.22984 0.90084 0.83782 1.04342 1.86154 1.37187 1.12187 1.87663 1.19005 0.92582 0.84028 0.95592 1.21530 0.93050 0.99146 1.06478 1.21274 1.01343 0.89993 0.94996 1.20715 0.93034 0.86985 1.09186 1.98384 1.88587 1.18755 1.97106 1.20864 0.94975 0.94768 0.97848 1.20198 0.85363 0.92738 1.12497 1.98387 1.11440 1.96050 1.97107 0.91183 0.85891 0.85879 0.91819 0.91816 0.88772 0.88790 0.80993 0.81496 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.60 13.67 21.63 0.30 -52.31 16 2 C 0.00 -0.22 5.49 84.87 0.47 0.25 16 3 Si 1.01 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.42 -25.50 9.65 67.94 0.66 -24.84 16 8 H 0.08 4.85 6.86 -2.91 -0.02 4.83 16 9 O -0.25 -14.11 9.75 14.84 0.14 -13.96 16 10 C 0.39 18.86 7.91 71.23 0.56 19.42 16 11 O -0.59 -31.85 15.22 20.80 0.32 -31.54 16 12 C -0.09 -2.64 5.81 29.85 0.17 -2.47 16 13 C -0.10 -2.64 4.87 30.60 0.15 -2.49 16 14 C 0.06 1.15 4.74 71.98 0.34 1.49 16 15 O -0.32 -7.35 9.60 -92.99 -0.89 -8.24 16 16 C 0.14 2.66 6.68 22.52 0.15 2.81 16 17 C -0.18 -2.53 9.04 22.36 0.20 -2.32 16 18 C -0.06 -0.70 9.82 22.28 0.22 -0.48 16 19 C -0.07 -1.04 6.32 22.33 0.14 -0.89 16 20 Cl -0.06 -0.75 28.95 -2.72 -0.08 -0.83 16 21 C -0.07 -1.05 9.61 22.30 0.21 -0.84 16 22 C -0.08 -1.61 6.33 22.41 0.14 -1.47 16 23 Cl -0.06 -1.30 28.50 -2.72 -0.08 -1.38 16 24 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 26 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 27 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 28 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 29 H 0.09 1.29 7.65 -2.39 -0.02 1.27 16 30 H 0.09 1.29 7.68 -2.39 -0.02 1.27 16 31 H 0.17 1.50 6.30 -2.91 -0.02 1.48 16 32 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -74.68 328.21 6.30 -68.37 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.15 Total: 6.43 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 3.42 Total: -11.84 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.30 Total: -52.31 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -0.43 Total: -53.74 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.16 Total: -2.21 kcal Total: -74.68 6.30 -68.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798170233.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.757 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds