Wall clock time and date at job start Tue Mar 31 2020 12:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47667 * 2.67240 * 3 2 1 5 5 C 1.36943 * 119.99642 * 264.12890 * 4 3 2 6 6 H 1.07994 * 120.00181 * 143.94725 * 5 4 3 7 7 C 1.38812 * 119.99837 * 323.93875 * 5 4 3 8 8 N 1.31614 * 120.00046 * 158.43490 * 7 5 4 9 9 Si 1.86809 * 119.99925 * 338.43376 * 7 5 4 10 10 H 1.48503 * 109.46629 * 95.30941 * 9 7 5 11 11 H 1.48499 * 109.47148 * 215.30751 * 9 7 5 12 12 H 1.48493 * 109.47188 * 335.30933 * 9 7 5 13 13 C 1.46501 * 120.00208 * 84.39142 * 4 3 2 14 14 C 1.50701 * 109.46633 * 84.12413 * 13 4 3 15 15 C 1.38369 * 119.85254 * 260.08098 * 14 13 4 16 16 C 1.37929 * 120.16619 * 179.72696 * 15 14 13 17 17 C 1.39658 * 119.85896 * 0.54450 * 16 15 14 18 18 C 1.43210 * 120.14162 * 179.70574 * 17 16 15 19 19 N 9.12620 * 152.39738 * 84.59726 * 2 1 3 20 20 C 1.39596 * 119.71428 * 359.72625 * 17 16 15 21 21 C 1.38059 * 119.83158 * 0.02562 * 20 17 16 22 22 Br 1.89107 * 119.93191 * 179.97438 * 21 20 17 23 23 H 4.40647 * 5.51281 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.47428 * 242.66514 * 3 2 1 25 25 H 1.09008 * 109.46597 * 122.67112 * 3 2 1 26 26 H 0.97000 * 120.00186 * 179.97438 * 8 7 5 27 27 H 1.08993 * 109.47146 * 204.12081 * 13 4 3 28 28 H 1.08993 * 109.47121 * 324.12730 * 13 4 3 29 29 H 1.08001 * 119.91510 * 0.02562 * 15 14 13 30 30 H 1.08000 * 120.07196 * 180.25258 * 16 15 14 31 31 H 1.07998 * 120.08406 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3788 -0.0644 5 6 3.4780 -2.0380 1.0859 6 1 3.2793 -3.0951 1.1822 7 6 4.0812 -1.3474 2.1280 8 7 4.0308 -1.8280 3.3523 9 14 4.9646 0.2641 1.7929 10 1 4.0420 1.3980 2.0546 11 1 6.1486 0.3739 2.6825 12 1 5.4053 0.3016 0.3754 13 6 3.2627 -2.0510 -1.3598 14 6 4.5836 -1.6863 -1.9869 15 6 4.6347 -0.7116 -2.9677 16 6 5.8410 -0.3688 -3.5420 17 6 7.0114 -1.0158 -3.1397 18 6 8.2663 -0.6691 -3.7364 19 7 9.2615 -0.3981 -4.2097 20 6 6.9529 -2.0023 -2.1537 21 6 5.7396 -2.3322 -1.5835 22 35 5.6568 -3.6686 -0.2481 23 1 -1.0498 -0.0004 0.0002 24 1 3.0091 0.4727 0.9129 25 1 3.0090 0.5556 -0.8652 26 1 4.4527 -1.3457 4.0805 27 1 3.2148 -3.1303 -1.2153 28 1 2.4504 -1.7356 -2.0144 29 1 3.7284 -0.2147 -3.2809 30 1 5.8797 0.3950 -4.3045 31 1 7.8544 -2.5062 -1.8378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799200813.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:42 Heat of formation + Delta-G solvation = 147.156528 kcal Electronic energy + Delta-G solvation = -18009.370705 eV Core-core repulsion = 15112.188455 eV Total energy + Delta-G solvation = -2897.182250 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 318.006 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.50297 -36.89389 -36.03953 -32.75124 -32.26541 -31.90170 -30.75804 -28.94457 -27.22250 -26.02893 -23.16487 -22.41591 -20.86141 -18.63955 -18.21648 -16.67067 -15.76607 -15.59920 -15.20944 -14.68239 -14.34500 -13.95240 -13.62136 -13.42909 -13.06699 -12.89162 -12.81500 -12.56492 -12.48622 -11.73557 -11.48664 -11.24964 -10.87235 -10.72214 -10.59929 -10.31236 -9.96754 -9.65958 -9.36057 -9.25986 -8.81615 -8.68291 -8.23553 -7.16156 -6.09216 -3.47874 0.80663 1.28714 2.14557 2.70285 2.93227 3.19144 3.36757 3.40802 3.46017 3.55790 3.87128 3.92415 4.40830 4.85277 4.94020 5.00966 5.10629 5.15140 5.34878 5.42841 5.65674 5.80271 5.92688 6.03507 6.15147 6.24395 6.30237 6.40745 6.61480 6.64664 6.79082 7.47115 7.84853 8.23197 8.32400 8.79051 9.55088 9.86305 11.04956 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.013610 B = 0.007232 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.874042 B = 3870.979020 C = 4502.955618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.162 4.162 3 C 0.226 3.774 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.093 0.907 7 C 0.048 3.952 8 N -0.888 5.888 9 Si 0.852 3.148 10 H -0.285 1.285 11 H -0.297 1.297 12 H -0.261 1.261 13 C 0.166 3.834 14 C -0.034 4.034 15 C -0.121 4.121 16 C -0.061 4.061 17 C -0.052 4.052 18 C 0.267 3.733 19 N -0.433 5.433 20 C -0.048 4.048 21 C -0.079 4.079 22 Br -0.009 7.009 23 H 0.206 0.794 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.265 0.735 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -0.765 -11.002 11.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.165 4.165 3 C 0.102 3.898 4 N -0.297 5.297 5 C -0.382 4.382 6 H 0.110 0.890 7 C -0.154 4.154 8 N -0.528 5.528 9 Si 0.682 3.318 10 H -0.213 1.213 11 H -0.224 1.224 12 H -0.185 1.185 13 C 0.040 3.960 14 C -0.040 4.040 15 C -0.141 4.141 16 C -0.082 4.082 17 C -0.057 4.057 18 C -0.048 4.048 19 N -0.109 5.109 20 C -0.071 4.071 21 C -0.159 4.159 22 Br 0.078 6.922 23 H 0.223 0.777 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.522 -0.888 -10.983 11.123 hybrid contribution 0.157 1.345 -0.013 1.354 sum 1.678 0.456 -10.996 11.133 Atomic orbital electron populations 1.24676 0.95678 1.02672 1.03833 1.24750 0.95687 0.98216 0.97830 1.18432 0.82744 0.87740 1.00909 1.44201 1.71666 1.11760 1.02051 1.18837 1.33997 0.95909 0.89411 0.89000 1.25327 0.97420 0.97210 0.95427 1.69804 1.44095 1.39990 0.98883 0.87290 0.80331 0.84983 0.79202 1.21321 1.22423 1.18522 1.20353 0.89521 0.99081 0.87033 1.21338 0.98196 0.93001 0.91475 1.20981 0.97693 0.98318 0.97099 1.21145 0.91030 0.97563 0.98429 1.15776 0.87187 1.01895 1.00873 1.25639 0.92769 0.93282 0.93122 1.81165 1.10922 1.09032 1.09748 1.21077 0.97288 0.95068 0.93656 1.21705 0.94875 1.00539 0.98825 1.96848 1.98808 1.47566 1.48982 0.77723 0.89984 0.91798 0.92505 0.89928 0.92334 0.84707 0.85159 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.24 19.25 29.55 0.57 -3.67 16 2 C -0.16 -3.12 13.67 -37.12 -0.51 -3.63 16 3 C 0.23 4.51 4.78 -6.83 -0.03 4.47 16 4 N -0.58 -11.96 2.06 -177.95 -0.37 -12.33 16 5 C -0.25 -6.16 7.38 -15.06 -0.11 -6.27 16 6 H 0.09 2.43 7.71 -52.49 -0.40 2.02 16 7 C 0.05 1.25 5.29 -17.43 -0.09 1.16 16 8 N -0.89 -25.14 13.97 55.49 0.78 -24.36 16 9 Si 0.85 20.38 24.92 -169.99 -4.24 16.14 16 10 H -0.28 -6.71 6.67 56.52 0.38 -6.34 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.17 2.79 5.34 -5.19 -0.03 2.77 16 14 C -0.03 -0.52 5.46 -104.51 -0.57 -1.09 16 15 C -0.12 -1.54 9.65 -39.65 -0.38 -1.93 16 16 C -0.06 -0.72 9.76 -39.16 -0.38 -1.10 16 17 C -0.05 -0.69 5.73 -106.93 -0.61 -1.31 16 18 C 0.27 3.71 15.33 -22.51 -0.34 3.37 16 19 N -0.43 -6.73 18.53 41.79 0.77 -5.96 16 20 C -0.05 -0.69 9.49 -39.14 -0.37 -1.06 16 21 C -0.08 -1.27 6.21 -39.58 -0.25 -1.51 16 22 Br -0.01 -0.15 29.14 -68.01 -1.98 -2.13 16 23 H 0.21 2.64 7.80 -54.10 -0.42 2.21 16 24 H 0.08 1.83 3.31 -51.93 -0.17 1.66 16 25 H 0.06 1.10 8.11 -51.92 -0.42 0.68 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.08 1.42 6.96 -51.93 -0.36 1.05 16 28 H 0.06 0.86 7.97 -51.93 -0.41 0.45 16 29 H 0.14 1.40 8.03 -52.49 -0.42 0.98 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -28.55 301.16 -6.23 -34.78 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -2.62 Total: -0.88 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.11 Total: -9.81 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 1.18 Total: -42.65 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.24 Total: 16.14 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -1.98 Total: -2.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.55 -6.23 -34.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799200813.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.941 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds