Wall clock time and date at job start Tue Mar 31 2020 12:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86804 * 119.99572 * 2 1 4 4 H 1.48497 * 109.47041 * 269.99826 * 3 2 1 5 5 H 1.48503 * 109.47344 * 29.99528 * 3 2 1 6 6 H 1.48496 * 109.47106 * 149.99579 * 3 2 1 7 7 C 1.38797 * 120.00604 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00129 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99975 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46904 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.46899 * 180.02562 * 12 11 10 14 14 C 1.34742 * 117.00219 * 180.02562 * 13 12 11 15 15 O 1.21502 * 119.99821 * 359.97438 * 14 13 12 16 16 C 1.47499 * 120.00311 * 179.97438 * 14 13 12 17 17 C 1.39760 * 120.15761 * 0.02562 * 16 14 13 18 18 C 1.37774 * 119.88441 * 180.25727 * 17 16 14 19 19 C 1.38625 * 120.21170 * 359.41377 * 18 17 16 20 20 Cl 1.73600 * 119.84072 * 180.32607 * 19 18 17 21 21 C 1.38369 * 120.32305 * 0.60685 * 19 18 17 22 22 C 1.38247 * 120.10650 * 359.67681 * 21 19 18 23 23 F 1.35099 * 120.10298 * 180.02562 * 22 21 19 24 24 H 0.96997 * 120.00586 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47070 * 59.99963 * 10 9 7 26 26 H 1.09003 * 109.47142 * 300.00414 * 10 9 7 27 27 H 1.09003 * 109.47240 * 60.00155 * 11 10 9 28 28 H 1.08997 * 109.46794 * 299.99889 * 11 10 9 29 29 H 1.09006 * 109.47500 * 60.00121 * 12 11 10 30 30 H 1.08997 * 109.47351 * 299.99605 * 12 11 10 31 31 H 1.08002 * 120.05428 * 359.97152 * 17 16 14 32 32 H 1.08002 * 119.89004 * 179.69705 * 18 17 16 33 33 H 1.08000 * 119.94552 * 179.69409 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7280 0.0019 10 6 2.5161 -3.8913 0.0029 11 6 1.9797 -5.3242 0.0036 12 6 3.1518 -6.3075 0.0038 13 8 2.6427 -7.6673 0.0038 14 6 3.5525 -8.6612 0.0045 15 8 4.7388 -8.3987 0.0047 16 6 3.1084 -10.0677 0.0051 17 6 1.7446 -10.3734 0.0044 18 6 1.3360 -11.6891 0.0104 19 6 2.2732 -12.7106 0.0048 20 17 1.7476 -14.3651 0.0038 21 6 3.6256 -12.4179 0.0059 22 6 4.0504 -11.1023 0.0058 23 9 5.3708 -10.8166 0.0063 24 1 -0.4851 0.8400 -0.0004 25 1 3.1247 -3.7304 0.8927 26 1 3.1248 -3.7319 -0.8872 27 1 1.3713 -5.4848 -0.8865 28 1 1.3708 -5.4837 0.8935 29 1 3.7606 -6.1471 0.8937 30 1 3.7602 -6.1478 -0.8863 31 1 1.0124 -9.5795 0.0039 32 1 0.2822 -11.9254 0.0148 33 1 4.3504 -13.2185 0.0065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805355371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:35 Heat of formation + Delta-G solvation = -142.690251 kcal Electronic energy + Delta-G solvation = -20176.831524 eV Core-core repulsion = 16461.199155 eV Total energy + Delta-G solvation = -3715.632368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.028 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.20731 -41.69906 -40.00887 -37.93400 -37.58097 -34.94907 -34.58548 -32.62221 -31.84679 -28.28952 -27.52925 -25.44503 -24.14713 -22.77833 -22.29136 -19.66807 -19.28947 -18.84934 -18.10613 -17.88923 -17.43708 -16.90283 -16.89825 -16.53447 -16.17941 -15.94807 -15.48275 -14.96482 -14.70929 -14.43485 -14.34061 -14.13663 -13.83384 -13.60954 -13.14656 -12.95570 -12.83460 -12.63836 -12.53609 -12.41764 -12.41105 -12.14741 -11.85317 -11.55972 -11.47485 -11.15037 -10.36357 -10.29570 -10.02974 -8.67503 -8.38329 -6.14422 -0.84047 -0.12932 0.78475 1.17898 1.19725 1.36480 1.39512 1.49915 1.78839 2.26451 2.26750 2.86327 2.96219 3.24531 3.35546 3.46609 3.73960 3.82213 3.84087 3.95126 4.13277 4.25324 4.31609 4.36885 4.59421 4.68408 4.77267 4.82335 4.91156 5.01805 5.06837 5.30026 5.36938 5.40078 6.17661 6.46939 7.04416 8.70845 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.001933 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.216967 B =14481.212392 C =15250.679417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.181 6.181 10 C -0.094 4.094 11 C -0.084 4.084 12 C 0.081 3.919 13 O -0.343 6.343 14 C 0.506 3.494 15 O -0.528 6.528 16 C -0.176 4.176 17 C -0.010 4.010 18 C -0.121 4.121 19 C 0.026 3.974 20 Cl -0.034 7.034 21 C -0.155 4.155 22 C 0.159 3.841 23 F -0.126 7.126 24 H 0.272 0.728 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.177 0.823 32 H 0.181 0.819 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -29.525 0.012 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.689 4.689 8 H 0.091 0.909 9 S 0.048 5.952 10 C -0.243 4.243 11 C -0.123 4.123 12 C 0.006 3.994 13 O -0.259 6.259 14 C 0.352 3.648 15 O -0.419 6.419 16 C -0.178 4.178 17 C -0.029 4.029 18 C -0.139 4.139 19 C -0.001 4.001 20 Cl -0.005 7.005 21 C -0.174 4.174 22 C 0.138 3.862 23 F -0.104 7.104 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.198 0.802 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.010 -29.618 0.016 29.686 hybrid contribution 2.257 1.452 -0.008 2.684 sum 4.268 -28.166 0.008 28.487 Atomic orbital electron populations 1.70135 1.07573 1.28614 1.47852 1.26043 0.96052 1.03043 0.93762 0.85028 0.78166 0.76485 0.78810 1.19321 1.19882 1.18862 1.23058 0.94842 0.92032 1.58978 0.90856 1.84580 1.12913 1.00674 1.97055 1.23077 1.00870 0.96658 1.03646 1.21103 0.96831 0.89494 1.04837 1.23114 0.96938 0.76242 1.03147 1.86472 1.39249 1.16563 1.83619 1.21195 0.83954 0.86991 0.72700 1.90903 1.19018 1.85317 1.46654 1.19359 0.95893 0.88388 1.14176 1.21632 0.92786 0.98216 0.90221 1.21484 1.01916 0.89998 1.00548 1.21080 0.93010 0.87649 0.98409 1.98435 1.90223 1.15696 1.96142 1.21076 0.96487 0.94723 1.05164 1.17681 0.77360 0.92751 0.98364 1.91595 1.31616 1.94304 1.92868 0.91892 0.91414 0.91397 0.89831 0.89829 0.90735 0.90739 0.80578 0.80161 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.86 13.22 21.65 0.29 -53.58 16 2 C 0.02 0.91 5.49 84.86 0.47 1.38 16 3 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.54 -30.83 9.50 67.95 0.65 -30.19 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.18 -9.34 21.44 -56.49 -1.21 -10.55 16 10 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 11 C -0.08 -2.53 5.60 30.59 0.17 -2.36 16 12 C 0.08 2.17 5.48 71.98 0.39 2.56 16 13 O -0.34 -8.56 9.47 -56.52 -0.54 -9.10 16 14 C 0.51 13.20 7.89 70.26 0.55 13.76 16 15 O -0.53 -17.28 15.13 19.83 0.30 -16.98 16 16 C -0.18 -3.43 5.88 -20.06 -0.12 -3.54 16 17 C -0.01 -0.13 9.61 22.53 0.22 0.09 16 18 C -0.12 -1.04 9.81 22.25 0.22 -0.83 16 19 C 0.03 0.27 6.33 22.39 0.14 0.41 16 20 Cl -0.03 -0.31 28.94 -2.72 -0.08 -0.39 16 21 C -0.16 -1.97 9.79 22.30 0.22 -1.75 16 22 C 0.16 3.02 7.29 22.68 0.17 3.19 16 23 F -0.13 -3.08 15.55 44.97 0.70 -2.39 16 24 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.18 1.66 7.61 -2.91 -0.02 1.64 16 32 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -70.06 331.63 6.11 -63.95 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.14 Total: 3.91 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.48 Total: -20.48 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.29 Total: -53.58 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.24 Total: -26.08 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.70 Total: -2.39 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.21 Total: -10.55 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -70.06 6.11 -63.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805355371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.740 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds