Wall clock time and date at job start Tue Mar 31 2020 12:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 120.00484 * 2 1 4 4 H 1.48505 * 109.47215 * 270.00444 * 3 2 1 5 5 H 1.48505 * 109.46965 * 29.99911 * 3 2 1 6 6 H 1.48492 * 109.47415 * 150.00055 * 3 2 1 7 7 C 1.38805 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99868 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99901 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47097 * 179.97438 * 11 10 9 13 13 O 1.45208 * 109.46705 * 179.97438 * 12 11 10 14 14 C 1.34708 * 116.99380 * 180.02562 * 13 12 11 15 15 O 1.21469 * 120.00408 * 0.02562 * 14 13 12 16 16 C 1.47738 * 119.99636 * 180.02562 * 14 13 12 17 17 C 1.39618 * 120.13291 * 359.97438 * 16 14 13 18 18 C 1.38163 * 119.84642 * 180.02562 * 17 16 14 19 19 F 1.35102 * 119.94416 * 180.02562 * 18 17 16 20 20 C 1.38580 * 120.11643 * 0.02562 * 18 17 16 21 21 C 1.38413 * 120.26278 * 359.97438 * 20 18 17 22 22 Cl 1.73599 * 119.92250 * 180.02562 * 21 20 18 23 23 C 1.38105 * 120.15615 * 0.02562 * 21 20 18 24 24 H 0.97004 * 119.99814 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47342 * 60.00294 * 10 9 7 26 26 H 1.08998 * 109.47444 * 299.99738 * 10 9 7 27 27 H 1.09008 * 109.47125 * 59.99768 * 11 10 9 28 28 H 1.09001 * 109.47228 * 300.00096 * 11 10 9 29 29 H 1.09000 * 109.46995 * 60.00629 * 12 11 10 30 30 H 1.08993 * 109.47193 * 299.99612 * 12 11 10 31 31 H 1.07999 * 120.07487 * 0.05391 * 17 16 14 32 32 H 1.07996 * 119.86765 * 179.97438 * 20 18 17 33 33 H 1.07996 * 120.05688 * 179.73141 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9791 -5.3243 -0.0012 12 6 3.1511 -6.3078 -0.0018 13 8 2.6417 -7.6676 -0.0018 14 6 3.5513 -8.6613 -0.0018 15 8 4.7373 -8.3990 -0.0014 16 6 3.1062 -10.0700 -0.0024 17 6 1.7437 -10.3746 -0.0024 18 6 1.3341 -11.6941 -0.0024 19 9 0.0161 -11.9911 -0.0029 20 6 2.2728 -12.7136 -0.0019 21 6 3.6247 -12.4170 -0.0019 22 17 4.7930 -13.7010 -0.0019 23 6 4.0465 -11.1019 -0.0019 24 1 -0.4850 0.8401 0.0004 25 1 3.1242 -3.7315 0.8894 26 1 3.1243 -3.7315 -0.8905 27 1 1.3706 -5.4841 -0.8914 28 1 1.3702 -5.4847 0.8886 29 1 3.7597 -6.1483 0.8882 30 1 3.7595 -6.1474 -0.8918 31 1 1.0116 -9.5806 -0.0029 32 1 1.9481 -13.7436 -0.0014 33 1 5.1017 -10.8723 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805490747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:08 Heat of formation + Delta-G solvation = -142.686146 kcal Electronic energy + Delta-G solvation = -20007.662542 eV Core-core repulsion = 16292.030352 eV Total energy + Delta-G solvation = -3715.632190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.028 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.09828 -41.81544 -40.00099 -37.93063 -37.58447 -34.95174 -34.58412 -32.70291 -31.72904 -28.33248 -27.56523 -25.67369 -24.02381 -22.78272 -22.27624 -19.77161 -19.40001 -18.66240 -17.83475 -17.47636 -17.44256 -17.12973 -16.89640 -16.82278 -16.13235 -16.01592 -15.85443 -15.01631 -14.67225 -14.50878 -14.30139 -14.07531 -13.81804 -13.34333 -13.12773 -12.98456 -12.95316 -12.63472 -12.55796 -12.41632 -12.40993 -12.22376 -11.90554 -11.55238 -11.48310 -11.14806 -10.35894 -10.35655 -10.00086 -8.67718 -8.38109 -6.14354 -0.78488 -0.27139 0.73413 1.15332 1.24417 1.38496 1.39862 1.50617 1.79787 2.23566 2.27093 2.85200 2.96548 3.24289 3.35765 3.62331 3.71460 3.76038 3.85209 3.94982 4.00152 4.15549 4.33195 4.34872 4.49294 4.62015 4.68529 4.76472 4.86054 5.01950 5.07306 5.30663 5.34631 5.40263 6.17866 6.46206 7.04582 8.71092 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.031700 B = 0.001947 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.074189 B =14379.548624 C =15236.874477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.074 0.926 9 S -0.186 6.186 10 C -0.092 4.092 11 C -0.087 4.087 12 C 0.081 3.919 13 O -0.347 6.347 14 C 0.513 3.487 15 O -0.522 6.522 16 C -0.091 4.091 17 C -0.088 4.088 18 C 0.102 3.898 19 F -0.128 7.128 20 C -0.099 4.099 21 C -0.022 4.022 22 Cl -0.037 7.037 23 C -0.056 4.056 24 H 0.272 0.728 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -28.791 -0.011 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.688 4.688 8 H 0.093 0.907 9 S 0.043 5.957 10 C -0.241 4.241 11 C -0.125 4.125 12 C 0.006 3.994 13 O -0.264 6.264 14 C 0.358 3.642 15 O -0.413 6.413 16 C -0.093 4.093 17 C -0.107 4.107 18 C 0.082 3.918 19 F -0.106 7.106 20 C -0.118 4.118 21 C -0.049 4.049 22 Cl -0.007 7.007 23 C -0.075 4.075 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.183 0.817 32 H 0.195 0.805 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.651 -28.870 -0.006 29.418 hybrid contribution 1.552 1.373 -0.006 2.072 sum 7.203 -27.497 -0.012 28.425 Atomic orbital electron populations 1.70144 1.07627 1.28589 1.47891 1.26062 0.96053 1.03110 0.93783 0.85014 0.78174 0.76411 0.78808 1.19318 1.19983 1.18745 1.23054 0.94850 0.91931 1.58918 0.90736 1.84635 1.13141 1.00854 1.97063 1.23066 1.00777 0.96482 1.03770 1.21120 0.97031 0.89741 1.04651 1.23139 0.96778 0.75990 1.03499 1.86492 1.39604 1.16827 1.83439 1.21126 0.83890 0.86717 0.72453 1.90860 1.18705 1.85171 1.46515 1.18629 0.93631 0.89111 1.07926 1.21684 0.95949 0.96739 0.96345 1.17251 0.78339 0.92635 1.03537 1.91583 1.31354 1.93878 1.93828 1.21489 0.90306 1.01726 0.98253 1.20356 0.90522 0.89394 1.04628 1.98424 1.57284 1.48315 1.96714 1.21257 1.01384 0.89620 0.95257 0.91930 0.91252 0.91233 0.90079 0.90080 0.90318 0.90299 0.81670 0.80499 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.01 13.22 21.65 0.29 -53.72 16 2 C 0.02 0.84 5.49 84.86 0.47 1.31 16 3 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -30.62 9.50 67.96 0.65 -29.97 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.19 -9.59 21.44 -56.49 -1.21 -10.80 16 10 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 11 C -0.09 -2.59 5.60 30.60 0.17 -2.42 16 12 C 0.08 2.06 5.48 71.98 0.39 2.45 16 13 O -0.35 -8.32 9.47 -56.17 -0.53 -8.85 16 14 C 0.51 11.90 7.90 70.33 0.56 12.45 16 15 O -0.52 -14.58 16.13 19.94 0.32 -14.26 16 16 C -0.09 -1.61 5.87 -20.10 -0.12 -1.73 16 17 C -0.09 -1.33 9.59 22.59 0.22 -1.12 16 18 C 0.10 1.36 7.29 22.33 0.16 1.52 16 19 F -0.13 -1.91 17.26 44.97 0.78 -1.14 16 20 C -0.10 -1.04 9.80 22.39 0.22 -0.82 16 21 C -0.02 -0.27 6.31 22.28 0.14 -0.13 16 22 Cl -0.04 -0.41 28.95 -2.72 -0.08 -0.49 16 23 C -0.06 -0.85 9.37 22.57 0.21 -0.64 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 26 H 0.07 2.57 8.14 -2.40 -0.02 2.56 16 27 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.17 2.34 7.61 -2.91 -0.02 2.32 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.16 2.35 7.65 -2.91 -0.02 2.33 16 Total: -1.00 -66.24 333.50 6.21 -60.04 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.14 Total: 5.93 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.47 Total: -22.17 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.29 Total: -53.72 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.21 Total: -23.11 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.14 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -9.59 SS G_CDS: -1.21 Total: -10.80 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -66.24 6.21 -60.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805490747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.649 kcal (2) G-P(sol) polarization free energy of solvation -66.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds