Wall clock time and date at job start Tue Mar 31 2020 12:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00184 * 3 2 1 5 5 H 1.48503 * 109.47230 * 30.00229 * 3 2 1 6 6 H 1.48503 * 109.47359 * 150.00197 * 3 2 1 7 7 C 1.37881 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99458 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00481 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47150 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00433 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99747 * 179.97438 * 11 10 9 14 14 S 1.65606 * 119.99997 * 180.02562 * 13 11 10 15 15 O 1.42095 * 106.40177 * 311.45758 * 14 13 11 16 16 O 1.42104 * 106.39793 * 178.54354 * 14 13 11 17 17 C 1.76192 * 107.21810 * 65.00105 * 14 13 11 18 18 C 1.38714 * 120.78375 * 269.97702 * 17 14 13 19 19 C 1.38143 * 119.19787 * 180.02562 * 18 17 14 20 20 N 1.31904 * 120.77996 * 0.02562 * 19 18 17 21 21 C 1.31950 * 121.70670 * 359.68219 * 20 19 18 22 22 Cl 1.73608 * 119.63367 * 180.28810 * 21 20 19 23 23 C 1.38393 * 120.73265 * 0.58300 * 21 20 19 24 24 H 0.96994 * 120.00109 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47237 * 59.99927 * 9 7 2 26 26 H 1.09004 * 109.46970 * 300.00160 * 9 7 2 27 27 H 1.09004 * 109.46429 * 60.00023 * 10 9 7 28 28 H 1.08996 * 109.47039 * 300.00350 * 10 9 7 29 29 H 0.97005 * 120.00212 * 359.97438 * 13 11 10 30 30 H 1.08000 * 120.39950 * 359.97438 * 18 17 14 31 31 H 1.07998 * 119.60887 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.43045 * 179.73537 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5286 -2.6364 -0.0022 12 8 6.1350 -1.5861 -0.0009 13 7 6.2025 -3.8036 -0.0026 14 16 7.8585 -3.8036 -0.0019 15 8 8.2602 -2.9005 -1.0228 16 8 8.2597 -5.1664 0.0321 17 6 8.3794 -3.0932 1.5240 18 6 8.5899 -1.7267 1.6357 19 6 8.9987 -1.2047 2.8477 20 7 9.1892 -1.9893 3.8907 21 6 8.9935 -3.2925 3.8233 22 17 9.2534 -4.2736 5.2317 23 6 8.5891 -3.8866 2.6406 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6579 -3.1497 -0.8925 28 1 3.6586 -3.1510 0.8874 29 1 5.7175 -4.6437 -0.0026 30 1 8.4370 -1.0789 0.7853 31 1 9.1650 -0.1418 2.9420 32 1 8.4344 -4.9543 2.5897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813080946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:34 Heat of formation + Delta-G solvation = -82.031887 kcal Electronic energy + Delta-G solvation = -21820.081748 eV Core-core repulsion = 18126.999685 eV Total energy + Delta-G solvation = -3693.082063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.67477 -40.03825 -37.63494 -37.08813 -36.32254 -34.57862 -33.74414 -33.40470 -31.60401 -31.45562 -26.60682 -24.84390 -24.17323 -22.56194 -20.46431 -20.15011 -18.97715 -18.11687 -17.62019 -17.28088 -16.48378 -16.28448 -16.03662 -15.42455 -15.21277 -15.01792 -14.52383 -14.30560 -14.14891 -13.10531 -13.01197 -12.68689 -12.67277 -12.52914 -12.38354 -12.26278 -12.06172 -11.74262 -11.62567 -11.14595 -11.07189 -10.94140 -10.51397 -10.27548 -10.15299 -10.00767 -9.75661 -9.49764 -9.34661 -8.62657 -6.14223 -4.14771 -0.31791 0.11484 0.39479 1.31428 2.10791 2.41355 2.94822 3.24141 3.29040 3.36596 3.43169 3.72909 4.00709 4.33633 4.38936 4.39504 4.52159 4.64151 4.93948 4.95134 5.00914 5.20692 5.31874 5.73152 5.78818 5.89246 6.29867 6.57518 7.08442 7.13264 7.20588 7.50418 7.68059 8.37810 8.87348 9.47487 10.98308 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003861 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.048835 B = 7249.455591 C = 8011.612350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.123 4.123 11 C 0.531 3.469 12 O -0.491 6.491 13 N -1.054 6.054 14 S 2.682 3.318 15 O -0.918 6.918 16 O -0.940 6.940 17 C -0.623 4.623 18 C -0.045 4.045 19 C 0.107 3.893 20 N -0.437 5.437 21 C 0.153 3.847 22 Cl -0.020 7.020 23 C -0.056 4.056 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.437 0.563 30 H 0.172 0.828 31 H 0.180 0.820 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.162 -9.644 5.269 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.093 0.907 9 C -0.041 4.041 10 C -0.164 4.164 11 C 0.320 3.680 12 O -0.361 6.361 13 N -0.822 5.822 14 S 2.770 3.230 15 O -0.908 6.908 16 O -0.931 6.931 17 C -0.716 4.716 18 C -0.066 4.066 19 C -0.051 4.051 20 N -0.148 5.148 21 C -0.011 4.011 22 Cl 0.008 6.992 23 C -0.078 4.078 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.275 0.725 30 H 0.189 0.811 31 H 0.197 0.803 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 19.277 -8.749 5.554 21.886 hybrid contribution -0.234 0.279 0.146 0.392 sum 19.043 -8.470 5.699 21.607 Atomic orbital electron populations 1.69894 1.06319 1.27161 1.50393 1.24964 0.94711 0.99241 0.94159 0.86815 0.80518 0.83446 0.78858 1.20077 1.21355 1.18613 1.21025 0.88907 0.94730 1.52116 0.90739 1.19466 0.97005 0.89566 0.98052 1.21887 0.85565 1.04346 1.04651 1.21802 0.93492 0.81142 0.71567 1.90790 1.70339 1.30098 1.44912 1.55151 1.28235 1.17090 1.81726 1.02739 0.72800 0.73711 0.73741 1.93671 1.79824 1.65316 1.52006 1.93650 1.80082 1.32679 1.86653 1.31508 1.14286 1.04641 1.21121 1.22291 0.90204 0.93549 1.00569 1.22981 0.94891 1.00244 0.87028 1.67072 1.11083 1.04110 1.32515 1.21678 1.00276 0.90200 0.88980 1.98426 1.94779 1.66323 1.39622 1.21587 0.94395 1.01671 0.90150 0.92544 0.95590 0.95777 0.88101 0.88237 0.72546 0.81087 0.80273 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.23 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.53 -14.04 9.66 -34.44 -0.33 -14.37 16 8 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 9 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 10 C -0.12 -1.96 5.64 -27.88 -0.16 -2.12 16 11 C 0.53 7.72 7.66 -10.99 -0.08 7.64 16 12 O -0.49 -8.52 13.27 -11.50 -0.15 -8.68 16 13 N -1.05 -11.04 5.70 31.22 0.18 -10.86 16 14 S 2.68 31.25 5.41 -107.50 -0.58 30.67 16 15 O -0.92 -13.72 16.33 -64.60 -1.06 -14.77 16 16 O -0.94 -11.32 17.38 -57.17 -0.99 -12.32 16 17 C -0.62 -7.11 5.77 -39.28 -0.23 -7.34 16 18 C -0.05 -0.52 8.64 -39.44 -0.34 -0.86 16 19 C 0.11 1.14 11.18 -17.56 -0.20 0.95 16 20 N -0.44 -5.30 10.34 -10.36 -0.11 -5.41 16 21 C 0.15 1.76 7.27 -17.44 -0.13 1.63 16 22 Cl -0.02 -0.20 29.11 -51.86 -1.51 -1.71 16 23 C -0.06 -0.59 9.38 -39.40 -0.37 -0.96 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.59 7.16 -51.93 -0.37 0.22 16 26 H 0.02 0.55 7.53 -51.93 -0.39 0.16 16 27 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.44 2.82 8.83 -34.48 -0.30 2.52 16 30 H 0.17 1.95 7.03 -52.49 -0.37 1.59 16 31 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.16 1.31 7.72 -52.49 -0.41 0.90 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -34.78 312.63 -8.13 -42.91 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -2.69 Total: -1.52 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.02 Total: -13.69 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.84 Total: -42.17 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -2.20 Total: -35.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 31.25 SS G_CDS: -0.58 Total: 30.67 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.51 Total: -1.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.78 -8.13 -42.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813080946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.124 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds