Wall clock time and date at job start Tue Mar 31 2020 12:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00184 * 3 2 1 5 5 H 1.48503 * 109.47230 * 30.00229 * 3 2 1 6 6 H 1.48503 * 109.47359 * 150.00197 * 3 2 1 7 7 C 1.37881 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99458 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00481 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47150 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00433 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99747 * 179.97438 * 11 10 9 14 14 S 1.65606 * 119.99997 * 180.02562 * 13 11 10 15 15 O 1.42095 * 106.40177 * 311.45758 * 14 13 11 16 16 O 1.42104 * 106.39793 * 178.54354 * 14 13 11 17 17 C 1.76192 * 107.21810 * 65.00105 * 14 13 11 18 18 C 1.38714 * 120.78375 * 269.97702 * 17 14 13 19 19 C 1.38143 * 119.19787 * 180.02562 * 18 17 14 20 20 N 1.31904 * 120.77996 * 0.02562 * 19 18 17 21 21 C 1.31950 * 121.70670 * 359.68219 * 20 19 18 22 22 Cl 1.73608 * 119.63367 * 180.28810 * 21 20 19 23 23 C 1.38393 * 120.73265 * 0.58300 * 21 20 19 24 24 H 0.96994 * 120.00109 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47237 * 59.99927 * 9 7 2 26 26 H 1.09004 * 109.46970 * 300.00160 * 9 7 2 27 27 H 1.09004 * 109.46429 * 60.00023 * 10 9 7 28 28 H 1.08996 * 109.47039 * 300.00350 * 10 9 7 29 29 H 0.97005 * 120.00212 * 359.97438 * 13 11 10 30 30 H 1.08000 * 120.39950 * 359.97438 * 18 17 14 31 31 H 1.07998 * 119.60887 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.43045 * 179.73537 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5286 -2.6364 -0.0022 12 8 6.1350 -1.5861 -0.0009 13 7 6.2025 -3.8036 -0.0026 14 16 7.8585 -3.8036 -0.0019 15 8 8.2602 -2.9005 -1.0228 16 8 8.2597 -5.1664 0.0321 17 6 8.3794 -3.0932 1.5240 18 6 8.5899 -1.7267 1.6357 19 6 8.9987 -1.2047 2.8477 20 7 9.1892 -1.9893 3.8907 21 6 8.9935 -3.2925 3.8233 22 17 9.2534 -4.2736 5.2317 23 6 8.5891 -3.8866 2.6406 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6579 -3.1497 -0.8925 28 1 3.6586 -3.1510 0.8874 29 1 5.7175 -4.6437 -0.0026 30 1 8.4370 -1.0789 0.7853 31 1 9.1650 -0.1418 2.9420 32 1 8.4344 -4.9543 2.5897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813080946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:33 Heat of formation + Delta-G solvation = -108.627196 kcal Electronic energy + Delta-G solvation = -21821.235007 eV Core-core repulsion = 18126.999685 eV Total energy + Delta-G solvation = -3694.235322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.027 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51449 -41.20198 -38.64217 -37.88611 -37.34512 -35.65031 -35.58092 -34.26773 -33.28491 -32.41738 -28.31749 -25.70118 -25.00560 -24.08716 -21.85513 -21.15423 -19.90173 -19.44256 -18.81850 -18.33509 -17.89716 -17.15743 -17.02456 -16.45106 -16.31545 -16.17718 -15.89106 -15.53182 -15.30081 -14.67815 -14.55575 -14.03085 -13.56829 -13.53841 -13.42068 -13.33418 -13.10205 -13.00048 -12.91043 -12.53961 -12.18081 -12.11308 -11.95880 -11.83916 -11.72441 -11.39112 -11.17519 -11.00379 -10.74394 -10.31550 -8.27795 -6.30871 -1.25358 -0.76330 -0.42623 0.50256 0.99283 1.37532 1.40327 1.42915 1.51909 2.08204 2.33800 2.37746 2.84656 3.09021 3.18629 3.38826 3.55954 3.58969 3.76126 3.94689 4.12842 4.28364 4.35009 4.48623 4.49631 4.97968 5.09653 5.37950 5.46741 5.60119 5.65732 6.25218 6.26018 6.44274 6.78548 7.34678 8.87668 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003861 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.048835 B = 7249.455591 C = 8011.612350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.934 3.066 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.527 4.527 8 H 0.053 0.947 9 C -0.004 4.004 10 C -0.120 4.120 11 C 0.541 3.459 12 O -0.520 6.520 13 N -1.035 6.035 14 S 2.703 3.297 15 O -0.950 6.950 16 O -0.941 6.941 17 C -0.628 4.628 18 C -0.056 4.056 19 C 0.106 3.894 20 N -0.455 5.455 21 C 0.141 3.859 22 Cl -0.011 7.011 23 C -0.055 4.055 24 H 0.266 0.734 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.456 0.544 30 H 0.169 0.831 31 H 0.207 0.793 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.540 -10.320 5.665 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.043 4.043 10 C -0.162 4.162 11 C 0.330 3.670 12 O -0.393 6.393 13 N -0.805 5.805 14 S 2.793 3.207 15 O -0.940 6.940 16 O -0.931 6.931 17 C -0.722 4.722 18 C -0.077 4.077 19 C -0.052 4.052 20 N -0.166 5.166 21 C -0.023 4.023 22 Cl 0.018 6.982 23 C -0.077 4.077 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.298 0.702 30 H 0.187 0.813 31 H 0.224 0.776 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 20.661 -9.484 5.941 23.497 hybrid contribution -0.661 0.384 0.057 0.767 sum 20.000 -9.099 5.997 22.776 Atomic orbital electron populations 1.70022 1.07951 1.28008 1.52645 1.25804 0.95401 1.02881 0.94429 0.85890 0.79587 0.79547 0.79086 1.19580 1.21141 1.17534 1.21425 0.91338 0.93688 1.50081 0.92903 1.19356 0.94036 0.93589 0.97278 1.21731 0.86792 1.00781 1.06855 1.21361 0.92833 0.81590 0.71179 1.90794 1.70704 1.31462 1.46320 1.54756 1.28002 1.16954 1.80787 1.01968 0.72446 0.73025 0.73266 1.93637 1.80401 1.66237 1.53747 1.93647 1.80015 1.32681 1.86761 1.31421 1.14894 1.04847 1.21046 1.22406 0.90624 0.93758 1.00936 1.23421 0.94022 1.01418 0.86365 1.67124 1.11694 1.04644 1.33143 1.21916 1.00393 0.90328 0.89674 1.98427 1.94709 1.65970 1.39131 1.21845 0.93609 1.02770 0.89441 0.92541 0.96188 0.96494 0.86195 0.85990 0.70223 0.81311 0.77639 0.79512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.87 13.96 21.45 0.30 -56.57 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.93 43.60 27.47 68.60 1.88 45.48 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 7 C -0.53 -27.82 9.66 25.60 0.25 -27.57 16 8 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 9 C 0.00 -0.19 3.33 29.85 0.10 -0.09 16 10 C -0.12 -3.57 5.64 29.85 0.17 -3.40 16 11 C 0.54 14.52 7.66 87.66 0.67 15.19 16 12 O -0.52 -17.23 13.27 13.27 0.18 -17.05 16 13 N -1.03 -18.99 5.70 -173.54 -0.99 -19.98 16 14 S 2.70 57.64 5.41 -56.49 -0.31 57.33 16 15 O -0.95 -27.21 16.33 -120.90 -1.97 -29.19 16 16 O -0.94 -20.29 17.38 -128.00 -2.22 -22.52 16 17 C -0.63 -13.22 5.77 22.46 0.13 -13.09 16 18 C -0.06 -1.22 8.64 22.36 0.19 -1.02 16 19 C 0.11 2.10 11.18 84.66 0.95 3.04 16 20 N -0.46 -10.35 10.34 -186.69 -1.93 -12.28 16 21 C 0.14 2.99 7.27 84.71 0.62 3.61 16 22 Cl -0.01 -0.20 29.11 -2.72 -0.08 -0.28 16 23 C -0.06 -1.04 9.38 22.39 0.21 -0.83 16 24 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 25 H 0.02 0.88 7.16 -2.39 -0.02 0.86 16 26 H 0.02 0.74 7.53 -2.39 -0.02 0.73 16 27 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 28 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.46 4.41 8.83 -96.74 -0.85 3.56 16 30 H 0.17 3.73 7.03 -2.91 -0.02 3.71 16 31 H 0.21 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.19 2.47 7.72 -2.91 -0.02 2.44 16 Total: -1.00 -74.19 312.63 -1.12 -75.32 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: 0.28 Total: 2.72 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 3.75 Total: -23.00 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.62 Total: -88.82 kcal Atomic # 8 Polarization: -64.73 SS G_CDS: -4.02 Total: -68.75 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -0.31 Total: 57.33 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -74.19 -1.12 -75.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813080946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.310 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds