Wall clock time and date at job start Tue Mar 31 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47424 * 300.00159 * 3 2 1 6 6 H 1.48497 * 109.47254 * 60.00694 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34715 * 117.00191 * 179.97438 * 13 12 11 15 15 O 1.21490 * 119.99774 * 0.02562 * 14 13 12 16 16 C 1.47647 * 120.00182 * 179.97438 * 14 13 12 17 17 C 1.39688 * 120.15314 * 359.72881 * 16 14 13 18 18 C 1.37885 * 119.88221 * 179.72384 * 17 16 14 19 19 C 1.38410 * 120.20176 * 0.55056 * 18 17 16 20 20 C 1.38376 * 120.31954 * 359.72486 * 19 18 17 21 21 Cl 1.73601 * 119.94983 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.10539 * 359.97438 * 20 19 18 23 23 Cl 1.73604 * 120.09954 * 179.97438 * 22 20 19 24 24 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 26 26 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 27 27 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 28 28 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 29 29 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 30 30 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 31 31 H 1.07994 * 120.05627 * 359.97438 * 17 16 14 32 32 H 1.07993 * 119.89654 * 180.25559 * 18 17 16 33 33 H 1.08003 * 119.84239 * 179.74912 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3980 -6.7794 1.3992 15 8 4.6336 -7.5904 0.5258 16 6 5.2060 -6.7695 2.6349 17 6 4.9422 -5.8340 3.6382 18 6 5.6965 -5.8334 4.7924 19 6 6.7214 -6.7494 4.9549 20 6 6.9937 -7.6760 3.9639 21 17 8.2818 -8.8201 4.1775 22 6 6.2414 -7.6923 2.8040 23 17 6.5836 -8.8545 1.5606 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.9446 -4.9827 -0.8897 28 1 0.9452 -4.9822 0.8902 29 1 3.3210 -5.7957 -0.8430 30 1 2.1820 -6.9376 -0.0898 31 1 4.1462 -5.1152 3.5118 32 1 5.4901 -5.1130 5.5700 33 1 7.3112 -6.7411 5.8596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815173610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:04 Heat of formation + Delta-G solvation = -115.060086 kcal Electronic energy + Delta-G solvation = -20939.935975 eV Core-core repulsion = 17211.085244 eV Total energy + Delta-G solvation = -3728.850730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67517 -39.25478 -37.13863 -36.86362 -36.72192 -36.00566 -32.81703 -31.95018 -31.07634 -30.00858 -26.99642 -24.97981 -23.20096 -22.51590 -22.17228 -21.11696 -18.50283 -17.35378 -16.65967 -16.56798 -16.34925 -15.97434 -15.44746 -15.39645 -14.70260 -14.58193 -14.42460 -14.23725 -13.68508 -12.97169 -12.82485 -12.42413 -12.28018 -12.08466 -11.96612 -11.76225 -11.71574 -11.48477 -11.23737 -10.94217 -10.89067 -10.76009 -10.43037 -10.13291 -10.01977 -9.47661 -9.15065 -9.12805 -8.92078 -8.25426 -6.15417 -4.17132 0.15247 0.54719 1.44003 1.84555 2.29335 2.59336 3.19372 3.26500 3.33286 3.39674 4.21266 4.29412 4.37029 4.54364 4.68397 4.73054 4.82284 5.05576 5.18664 5.21394 5.42061 5.42765 5.62762 5.77581 5.82625 5.90242 6.02743 6.08829 6.46200 7.01456 7.35779 7.71623 7.75215 8.08810 8.48169 8.95863 9.47905 10.96152 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.002766 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.265085 B =10119.442425 C =11050.208827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.077 3.923 13 O -0.335 6.335 14 C 0.502 3.498 15 O -0.488 6.488 16 C -0.104 4.104 17 C -0.041 4.041 18 C -0.116 4.116 19 C -0.068 4.068 20 C -0.050 4.050 21 Cl -0.044 7.044 22 C 0.018 3.982 23 Cl -0.011 7.011 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.017 -17.227 10.718 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.251 6.251 14 C 0.345 3.655 15 O -0.376 6.376 16 C -0.107 4.107 17 C -0.059 4.059 18 C -0.134 4.134 19 C -0.086 4.086 20 C -0.077 4.077 21 Cl -0.015 7.015 22 C -0.010 4.010 23 Cl 0.019 6.981 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.178 0.822 32 H 0.168 0.832 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.246 -17.515 10.315 23.731 hybrid contribution 0.116 0.626 -0.232 0.678 sum 12.363 -16.889 10.083 23.233 Atomic orbital electron populations 1.69964 1.06113 1.27131 1.50558 1.24951 0.94980 0.99470 0.95101 0.86282 0.80049 0.82531 0.77657 1.19443 1.20829 1.20800 1.21084 0.94135 0.89262 1.50804 0.91445 1.20243 0.88739 0.83494 0.95526 1.87921 1.35320 1.12600 1.95237 1.22333 0.93185 0.85433 1.00682 1.23277 0.93550 0.98979 0.83854 1.86606 1.43041 1.53434 1.42010 1.20724 0.79430 0.79034 0.86280 1.90920 1.67261 1.37140 1.42324 1.18910 0.97458 0.98957 0.95333 1.21792 0.98039 0.95167 0.90903 1.21300 0.94870 0.98940 0.98302 1.21341 0.97023 0.92488 0.97797 1.20608 0.94814 0.96991 0.95314 1.98399 1.47559 1.58562 1.96974 1.20849 0.95386 0.93745 0.91021 1.98443 1.93707 1.55409 1.50547 0.92658 0.97595 0.97487 0.91785 0.93126 0.90231 0.90179 0.82205 0.83223 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.89 9.43 -34.44 -0.32 -15.22 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.18 5.69 36.00 0.20 5.39 16 10 O -0.39 -9.17 10.30 -38.79 -0.40 -9.57 16 11 C 0.06 1.07 6.33 37.16 0.24 1.31 16 12 C 0.08 1.17 5.85 37.16 0.22 1.39 16 13 O -0.33 -5.34 9.44 -43.31 -0.41 -5.75 16 14 C 0.50 7.55 7.89 34.57 0.27 7.82 16 15 O -0.49 -8.02 13.76 -19.26 -0.27 -8.28 16 16 C -0.10 -1.32 5.88 -104.96 -0.62 -1.93 16 17 C -0.04 -0.42 9.62 -39.17 -0.38 -0.79 16 18 C -0.12 -0.88 10.03 -39.65 -0.40 -1.28 16 19 C -0.07 -0.51 9.82 -39.47 -0.39 -0.90 16 20 C -0.05 -0.49 6.32 -39.52 -0.25 -0.74 16 21 Cl -0.04 -0.40 27.95 -51.86 -1.45 -1.85 16 22 C 0.02 0.22 6.36 -39.02 -0.25 -0.03 16 23 Cl -0.01 -0.14 25.03 -51.86 -1.30 -1.44 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.16 1.63 7.61 -52.49 -0.40 1.23 16 32 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -32.36 327.98 -8.26 -40.62 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -3.33 Total: -5.96 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.77 Total: -3.49 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.07 Total: -23.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -2.75 Total: -3.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.36 -8.26 -40.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.444 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds