Wall clock time and date at job start Tue Mar 31 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47424 * 300.00159 * 3 2 1 6 6 H 1.48497 * 109.47254 * 60.00694 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34715 * 117.00191 * 179.97438 * 13 12 11 15 15 O 1.21490 * 119.99774 * 0.02562 * 14 13 12 16 16 C 1.47647 * 120.00182 * 179.97438 * 14 13 12 17 17 C 1.39688 * 120.15314 * 359.72881 * 16 14 13 18 18 C 1.37885 * 119.88221 * 179.72384 * 17 16 14 19 19 C 1.38410 * 120.20176 * 0.55056 * 18 17 16 20 20 C 1.38376 * 120.31954 * 359.72486 * 19 18 17 21 21 Cl 1.73601 * 119.94983 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.10539 * 359.97438 * 20 19 18 23 23 Cl 1.73604 * 120.09954 * 179.97438 * 22 20 19 24 24 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 26 26 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 27 27 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 28 28 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 29 29 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 30 30 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 31 31 H 1.07994 * 120.05627 * 359.97438 * 17 16 14 32 32 H 1.07993 * 119.89654 * 180.25559 * 18 17 16 33 33 H 1.08003 * 119.84239 * 179.74912 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3980 -6.7794 1.3992 15 8 4.6336 -7.5904 0.5258 16 6 5.2060 -6.7695 2.6349 17 6 4.9422 -5.8340 3.6382 18 6 5.6965 -5.8334 4.7924 19 6 6.7214 -6.7494 4.9549 20 6 6.9937 -7.6760 3.9639 21 17 8.2818 -8.8201 4.1775 22 6 6.2414 -7.6923 2.8040 23 17 6.5836 -8.8545 1.5606 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 0.9446 -4.9827 -0.8897 28 1 0.9452 -4.9822 0.8902 29 1 3.3210 -5.7957 -0.8430 30 1 2.1820 -6.9376 -0.0898 31 1 4.1462 -5.1152 3.5118 32 1 5.4901 -5.1130 5.5700 33 1 7.3112 -6.7411 5.8596 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815173610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:04 Heat of formation + Delta-G solvation = -133.413327 kcal Electronic energy + Delta-G solvation = -20940.731831 eV Core-core repulsion = 17211.085244 eV Total energy + Delta-G solvation = -3729.646587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74408 -40.15607 -38.71124 -37.71414 -37.62811 -37.31554 -34.93862 -32.85086 -31.85128 -31.43107 -29.02394 -25.96670 -24.54699 -24.01455 -23.46265 -22.19758 -19.47659 -18.70789 -18.33633 -17.93688 -17.40303 -17.09887 -16.84958 -16.39589 -16.33387 -16.10132 -15.29927 -15.23528 -15.20378 -14.39295 -14.16995 -13.75938 -13.29501 -13.16133 -13.02171 -12.96276 -12.86865 -12.73354 -12.62176 -12.54879 -12.42517 -12.03983 -11.96060 -11.74689 -11.25657 -11.14923 -10.88985 -10.26424 -10.25915 -9.90947 -8.31566 -6.43381 -0.68660 -0.21138 0.63057 1.02804 1.30578 1.41881 1.42719 1.51496 1.57482 2.35331 2.36120 3.02675 3.06256 3.32365 3.63746 3.71194 3.92110 4.02285 4.11459 4.12996 4.21425 4.42379 4.52599 4.66063 4.75695 4.87083 4.95212 5.08629 5.18826 5.27841 5.41784 5.55737 5.96291 6.49910 6.57209 6.80889 7.28347 8.80782 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.002766 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.265085 B =10119.442425 C =11050.208827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.054 3.946 12 C 0.080 3.920 13 O -0.347 6.347 14 C 0.500 3.500 15 O -0.509 6.509 16 C -0.128 4.128 17 C -0.046 4.046 18 C -0.100 4.100 19 C -0.051 4.051 20 C -0.055 4.055 21 Cl -0.039 7.039 22 C 0.003 3.997 23 Cl -0.030 7.030 24 H 0.271 0.729 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.157 0.843 32 H 0.187 0.813 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.090 -16.438 12.515 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.022 4.022 12 C 0.007 3.993 13 O -0.264 6.264 14 C 0.345 3.655 15 O -0.399 6.399 16 C -0.130 4.130 17 C -0.065 4.065 18 C -0.118 4.118 19 C -0.069 4.069 20 C -0.083 4.083 21 Cl -0.010 7.010 22 C -0.025 4.025 23 Cl 0.000 7.000 24 H 0.080 0.920 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.174 0.826 32 H 0.204 0.796 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 13.318 -16.751 12.117 24.592 hybrid contribution -0.219 0.308 -0.714 0.808 sum 13.099 -16.443 11.403 23.916 Atomic orbital electron populations 1.70059 1.07666 1.28610 1.50525 1.25919 0.95943 1.03261 0.93943 0.85163 0.78662 0.77462 0.78295 1.18937 1.19848 1.19470 1.21407 0.94071 0.90893 1.52190 0.92178 1.19871 0.88543 0.84340 0.93933 1.87866 1.35494 1.14155 1.95342 1.22642 0.94334 0.83244 1.02000 1.23243 0.93015 0.99386 0.83639 1.86594 1.43605 1.54093 1.42101 1.21193 0.79045 0.78293 0.86973 1.90897 1.67812 1.37912 1.43307 1.18887 0.98205 1.00753 0.95177 1.21901 0.98532 0.94578 0.91441 1.21698 0.93482 0.98914 0.97720 1.21799 0.96467 0.90673 0.97988 1.20806 0.94721 0.97638 0.95124 1.98403 1.47189 1.58537 1.96868 1.20973 0.96185 0.93799 0.91541 1.98427 1.93832 1.56146 1.51628 0.92012 0.99152 0.99035 0.89993 0.92217 0.90967 0.87209 0.82575 0.79623 0.79814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.43 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 43.56 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.55 -32.14 9.43 25.60 0.24 -31.90 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.38 5.69 71.23 0.41 11.78 16 10 O -0.41 -19.53 10.30 -145.57 -1.50 -21.03 16 11 C 0.05 1.91 6.33 71.98 0.46 2.37 16 12 C 0.08 2.45 5.85 71.98 0.42 2.87 16 13 O -0.35 -11.21 9.44 -53.59 -0.51 -11.71 16 14 C 0.50 15.31 7.89 70.31 0.55 15.86 16 15 O -0.51 -17.13 13.76 19.87 0.27 -16.86 16 16 C -0.13 -3.21 5.88 -20.08 -0.12 -3.33 16 17 C -0.05 -0.89 9.62 22.54 0.22 -0.67 16 18 C -0.10 -1.20 10.03 22.23 0.22 -0.98 16 19 C -0.05 -0.60 9.82 22.34 0.22 -0.38 16 20 C -0.06 -0.99 6.32 22.31 0.14 -0.85 16 21 Cl -0.04 -0.66 27.95 -2.72 -0.08 -0.73 16 22 C 0.00 0.08 6.36 22.64 0.14 0.22 16 23 Cl -0.03 -0.79 25.03 -2.72 -0.07 -0.85 16 24 H 0.27 14.74 8.31 -92.71 -0.77 13.96 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.16 3.10 7.61 -2.91 -0.02 3.08 16 32 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 33 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -70.76 327.98 4.94 -65.82 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: 1.14 Total: -1.69 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 3.37 Total: -4.09 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.28 Total: -54.43 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.73 Total: -49.60 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.14 Total: -1.59 kcal Total: -70.76 4.94 -65.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815173610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.596 kcal (2) G-P(sol) polarization free energy of solvation -70.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds