Wall clock time and date at job start Tue Mar 31 2020 11:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48507 * 109.47018 * 269.99733 * 3 2 1 5 5 H 1.48498 * 109.47218 * 29.99445 * 3 2 1 6 6 H 1.48493 * 109.47040 * 150.00175 * 3 2 1 7 7 C 1.37877 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99859 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00215 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.47383 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99926 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46835 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47370 * 64.99832 * 12 11 10 14 14 C 1.34791 * 117.00300 * 179.97438 * 13 12 11 15 15 O 1.21555 * 119.99875 * 359.97438 * 14 13 12 16 16 C 1.47097 * 119.99892 * 180.02562 * 14 13 12 17 17 C 1.47095 * 127.21588 * 359.97438 * 16 14 13 18 18 C 1.34113 * 105.96877 * 179.97438 * 17 16 14 19 19 O 1.34272 * 109.18619 * 359.97438 * 18 17 16 20 20 C 1.33661 * 110.92603 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 125.82497 * 180.25884 * 20 19 18 22 22 H 0.97007 * 119.99589 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47053 * 59.99585 * 9 7 2 24 24 H 1.08999 * 109.47080 * 300.00088 * 9 7 2 25 25 H 1.08997 * 109.47294 * 59.99773 * 11 10 9 26 26 H 1.09005 * 109.47204 * 299.99396 * 11 10 9 27 27 H 1.08998 * 109.47191 * 304.99473 * 12 11 10 28 28 H 1.09000 * 109.47241 * 184.99817 * 12 11 10 29 29 H 1.08004 * 127.01666 * 0.02562 * 17 16 14 30 30 H 1.07999 * 125.40484 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4123 -2.6542 0.0021 12 6 5.8068 -4.1325 0.0025 13 8 5.3735 -4.7495 -1.2384 14 6 5.6465 -6.0597 -1.3984 15 8 6.2312 -6.6698 -0.5247 16 6 5.2379 -6.7510 -2.6309 17 6 4.5284 -6.1721 -3.7821 18 6 4.3735 -7.1730 -4.6613 19 8 4.9172 -8.2920 -4.1563 20 6 5.4387 -8.0656 -2.9466 21 35 6.3126 -9.3438 -1.8611 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 5.8144 -2.1710 0.8925 26 1 5.8159 -2.1704 -0.8875 27 1 5.3304 -4.6354 0.8440 28 1 6.8896 -4.2196 0.0929 29 1 4.2001 -5.1496 -3.8965 30 1 3.8890 -7.0916 -5.6231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815238411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:30 Heat of formation + Delta-G solvation = -100.170105 kcal Electronic energy + Delta-G solvation = -17997.651849 eV Core-core repulsion = 14614.309946 eV Total energy + Delta-G solvation = -3383.341903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.998 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.93753 -40.10010 -37.23012 -36.09489 -33.47975 -32.70824 -32.40986 -30.37660 -29.21175 -27.62981 -24.67799 -22.43666 -21.91502 -21.65585 -20.29594 -18.61822 -17.19656 -16.93670 -16.83317 -16.33253 -15.98438 -15.31391 -14.94681 -14.71628 -14.33535 -13.46099 -13.26845 -13.13557 -13.07929 -12.54768 -12.38735 -11.75681 -11.62460 -11.21986 -11.10305 -10.86411 -10.68313 -10.49547 -10.29620 -10.21425 -9.89318 -9.22765 -9.04245 -8.93084 -8.52971 -6.14059 -4.13510 0.41040 0.65023 1.69511 2.56543 2.89078 2.99514 3.22437 3.29637 3.30385 4.30598 4.32668 4.45404 4.55455 4.90552 5.12299 5.14675 5.17048 5.36630 5.39207 5.67679 5.77402 5.90529 5.94670 6.40163 6.45980 6.53285 6.94380 7.55197 7.75804 7.93632 8.61271 8.97462 9.44634 10.98933 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.002870 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.403858 B = 9752.810532 C =10318.474078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.057 3.943 12 C 0.076 3.924 13 O -0.331 6.331 14 C 0.532 3.468 15 O -0.496 6.496 16 C -0.171 4.171 17 C -0.159 4.159 18 C -0.022 4.022 19 O -0.156 6.156 20 C 0.048 3.952 21 Br 0.086 6.914 22 H 0.267 0.733 23 H 0.004 0.996 24 H 0.001 0.999 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.145 -17.826 -8.559 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C 0.002 3.998 13 O -0.247 6.247 14 C 0.376 3.624 15 O -0.386 6.386 16 C -0.176 4.176 17 C -0.179 4.179 18 C -0.089 4.089 19 O -0.053 6.053 20 C -0.083 4.083 21 Br 0.170 6.830 22 H 0.077 0.923 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.194 0.806 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 15.348 -18.749 -8.015 25.521 hybrid contribution 0.307 1.642 -0.122 1.675 sum 15.655 -17.107 -8.137 24.575 Atomic orbital electron populations 1.69879 1.06072 1.27122 1.50216 1.24769 0.94811 0.98753 0.94611 0.86845 0.80330 0.83732 0.78789 1.19890 1.20754 1.19100 1.20880 0.88202 0.95383 1.51346 0.89921 1.20633 0.96321 0.79246 0.94468 1.87984 1.16638 1.29754 1.95086 1.22407 0.86149 0.92760 1.00700 1.23231 0.99287 0.93086 0.84184 1.86652 1.73507 1.22960 1.41565 1.19742 0.76275 0.81245 0.85168 1.90898 1.38547 1.66940 1.42223 1.20325 1.08428 0.92160 0.96717 1.23128 1.01281 1.01886 0.91583 1.24200 1.01441 0.82491 1.00791 1.83883 1.57484 1.37034 1.26854 1.24144 1.02317 0.94269 0.87563 1.96976 1.73657 1.53099 1.59267 0.92324 0.97824 0.98179 0.91664 0.93000 0.90089 0.90068 0.80574 0.76245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -15.40 9.99 -34.44 -0.34 -15.75 16 8 H 0.08 2.69 8.06 -52.48 -0.42 2.27 16 9 C 0.17 4.22 4.76 36.00 0.17 4.39 16 10 O -0.38 -8.69 10.30 -38.80 -0.40 -9.09 16 11 C 0.06 0.97 6.33 37.16 0.24 1.21 16 12 C 0.08 1.15 5.86 37.16 0.22 1.37 16 13 O -0.33 -5.50 10.10 -43.52 -0.44 -5.94 16 14 C 0.53 8.33 7.95 34.32 0.27 8.61 16 15 O -0.50 -8.17 15.14 -19.31 -0.29 -8.46 16 16 C -0.17 -2.33 6.32 -103.27 -0.65 -2.98 16 17 C -0.16 -1.77 11.05 -37.44 -0.41 -2.18 16 18 C -0.02 -0.19 12.02 29.28 0.35 0.16 16 19 O -0.16 -1.66 10.52 7.48 0.08 -1.58 16 20 C 0.05 0.59 7.86 30.17 0.24 0.83 16 21 Br 0.09 0.95 32.42 -68.01 -2.21 -1.25 16 22 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 24 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -33.78 298.08 -5.58 -39.36 By element: Atomic # 1 Polarization: -2.05 SS G_CDS: -2.89 Total: -4.94 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.02 Total: -2.33 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.05 Total: -25.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 35 Polarization: 0.95 SS G_CDS: -2.21 Total: -1.25 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.78 -5.58 -39.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.814 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds