Wall clock time and date at job start Tue Mar 31 2020 11:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48507 * 109.47018 * 269.99733 * 3 2 1 5 5 H 1.48498 * 109.47218 * 29.99445 * 3 2 1 6 6 H 1.48493 * 109.47040 * 150.00175 * 3 2 1 7 7 C 1.37877 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99859 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00215 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.47383 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99926 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46835 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47370 * 64.99832 * 12 11 10 14 14 C 1.34791 * 117.00300 * 179.97438 * 13 12 11 15 15 O 1.21555 * 119.99875 * 359.97438 * 14 13 12 16 16 C 1.47097 * 119.99892 * 180.02562 * 14 13 12 17 17 C 1.47095 * 127.21588 * 359.97438 * 16 14 13 18 18 C 1.34113 * 105.96877 * 179.97438 * 17 16 14 19 19 O 1.34272 * 109.18619 * 359.97438 * 18 17 16 20 20 C 1.33661 * 110.92603 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 125.82497 * 180.25884 * 20 19 18 22 22 H 0.97007 * 119.99589 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47053 * 59.99585 * 9 7 2 24 24 H 1.08999 * 109.47080 * 300.00088 * 9 7 2 25 25 H 1.08997 * 109.47294 * 59.99773 * 11 10 9 26 26 H 1.09005 * 109.47204 * 299.99396 * 11 10 9 27 27 H 1.08998 * 109.47191 * 304.99473 * 12 11 10 28 28 H 1.09000 * 109.47241 * 184.99817 * 12 11 10 29 29 H 1.08004 * 127.01666 * 0.02562 * 17 16 14 30 30 H 1.07999 * 125.40484 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4123 -2.6542 0.0021 12 6 5.8068 -4.1325 0.0025 13 8 5.3735 -4.7495 -1.2384 14 6 5.6465 -6.0597 -1.3984 15 8 6.2312 -6.6698 -0.5247 16 6 5.2379 -6.7510 -2.6309 17 6 4.5284 -6.1721 -3.7821 18 6 4.3735 -7.1730 -4.6613 19 8 4.9172 -8.2920 -4.1563 20 6 5.4387 -8.0656 -2.9466 21 35 6.3126 -9.3438 -1.8611 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 5.8144 -2.1710 0.8925 26 1 5.8159 -2.1704 -0.8875 27 1 5.3304 -4.6354 0.8440 28 1 6.8896 -4.2196 0.0929 29 1 4.2001 -5.1496 -3.8965 30 1 3.8890 -7.0916 -5.6231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815238411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:29 Heat of formation + Delta-G solvation = -123.030914 kcal Electronic energy + Delta-G solvation = -17998.643168 eV Core-core repulsion = 14614.309946 eV Total energy + Delta-G solvation = -3384.333222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 317.998 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.79432 -41.30867 -38.81408 -37.44726 -34.89104 -34.38779 -33.28471 -31.84506 -30.14772 -29.54145 -25.80044 -24.02711 -23.52634 -22.67707 -21.27975 -19.59716 -19.09794 -18.27308 -18.00625 -17.55377 -17.04801 -16.90072 -16.43585 -16.27609 -15.57842 -14.86791 -14.59689 -14.38752 -14.23171 -13.98872 -13.74389 -13.35198 -13.00556 -12.63732 -12.51669 -12.32596 -12.09054 -11.85814 -11.73156 -11.39174 -11.34380 -11.12880 -10.92575 -10.40407 -9.88514 -8.36392 -6.45031 -0.47623 -0.34634 0.86991 1.35512 1.38939 1.45984 1.49677 1.79298 2.18363 2.30897 2.95454 2.96758 3.42850 3.54843 3.92384 4.00764 4.12725 4.24292 4.39416 4.50344 4.58909 4.68983 4.72046 5.00658 5.12411 5.25503 5.43398 5.57899 5.91726 6.56187 6.59321 6.71833 7.19371 8.80906 Molecular weight = 318.00amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.002870 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.403858 B = 9752.810532 C =10318.474078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.241 1.241 7 C -0.549 4.549 8 H 0.027 0.973 9 C 0.179 3.821 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.074 3.926 13 O -0.348 6.348 14 C 0.528 3.472 15 O -0.512 6.512 16 C -0.199 4.199 17 C -0.185 4.185 18 C 0.009 3.991 19 O -0.153 6.153 20 C 0.042 3.958 21 Br 0.091 6.909 22 H 0.273 0.727 23 H 0.019 0.981 24 H 0.016 0.984 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.178 0.822 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.955 -16.771 -9.591 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.165 1.165 7 C -0.587 4.587 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.328 6.328 11 C -0.026 4.026 12 C 0.001 3.999 13 O -0.264 6.264 14 C 0.374 3.626 15 O -0.402 6.402 16 C -0.205 4.205 17 C -0.205 4.205 18 C -0.058 4.058 19 O -0.049 6.049 20 C -0.090 4.090 21 Br 0.175 6.825 22 H 0.082 0.918 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.195 0.805 30 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 17.177 -17.723 -9.048 26.287 hybrid contribution -0.312 1.182 0.163 1.233 sum 16.864 -16.541 -8.885 25.238 Atomic orbital electron populations 1.70045 1.08389 1.28834 1.51007 1.25880 0.95813 1.03536 0.93339 0.85572 0.79514 0.77153 0.79872 1.18271 1.20036 1.16458 1.21179 0.91138 0.93780 1.52573 0.95499 1.20362 0.93199 0.80600 0.95522 1.87928 1.20733 1.28733 1.95393 1.22767 0.82795 0.94255 1.02770 1.23330 1.01073 0.91967 0.83502 1.86641 1.73958 1.23663 1.42148 1.20084 0.75900 0.80881 0.85743 1.90870 1.39411 1.67015 1.42942 1.20459 1.10020 0.93019 0.96955 1.23257 1.02658 1.02846 0.91718 1.25098 0.98677 0.80744 1.01265 1.83923 1.57136 1.37781 1.26075 1.24204 1.02529 0.94020 0.88209 1.96965 1.73563 1.52553 1.59437 0.91783 0.96374 0.96643 0.88859 0.91427 0.91109 0.86749 0.80461 0.71410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.01 0.71 5.47 84.65 0.46 1.18 16 3 Si 0.96 42.41 27.47 68.60 1.88 44.29 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 7 C -0.55 -33.38 9.99 25.60 0.26 -33.13 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C 0.18 8.77 4.76 71.23 0.34 9.11 16 10 O -0.41 -18.82 10.30 -145.57 -1.50 -20.32 16 11 C 0.05 1.61 6.33 71.98 0.46 2.07 16 12 C 0.07 2.19 5.86 71.98 0.42 2.61 16 13 O -0.35 -11.58 10.10 -54.36 -0.55 -12.12 16 14 C 0.53 16.70 7.95 70.15 0.56 17.26 16 15 O -0.51 -16.91 15.14 19.66 0.30 -16.61 16 16 C -0.20 -5.40 6.32 -18.99 -0.12 -5.52 16 17 C -0.19 -3.96 11.05 23.65 0.26 -3.70 16 18 C 0.01 0.13 12.02 66.88 0.80 0.93 16 19 O -0.15 -2.98 10.52 3.85 0.04 -2.94 16 20 C 0.04 1.00 7.86 67.46 0.53 1.53 16 21 Br 0.09 1.98 32.42 -20.37 -0.66 1.32 16 22 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 23 H 0.02 0.85 7.20 -2.38 -0.02 0.83 16 24 H 0.02 0.72 7.57 -2.39 -0.02 0.71 16 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.11 2.58 8.14 -2.39 -0.02 2.57 16 29 H 0.18 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.27 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -76.06 298.08 4.89 -71.16 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.11 Total: 1.79 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 3.97 Total: -7.67 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.30 Total: -58.90 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -1.71 Total: -52.00 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.29 kcal Atomic # 35 Polarization: 1.98 SS G_CDS: -0.66 Total: 1.32 kcal Total: -76.06 4.89 -71.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815238411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.866 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds