Wall clock time and date at job start Tue Mar 31 2020 11:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.70618 * 124.52093 * 2 1 4 4 C 1.75825 * 91.57398 * 179.73438 * 3 2 1 5 5 C 1.46394 * 125.45414 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99798 * 180.02562 * 5 4 3 7 7 O 1.34902 * 119.99775 * 0.02562 * 5 4 3 8 8 C 1.45199 * 116.99663 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47153 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47305 * 180.02562 * 9 8 7 11 11 H 1.07998 * 119.99926 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99925 * 180.02562 * 10 9 8 13 13 N 1.31508 * 119.99940 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99657 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47399 * 59.99824 * 14 12 10 16 16 H 1.48500 * 109.46967 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47159 * 299.99556 * 14 12 10 18 18 C 1.36765 * 109.09181 * 0.02562 * 4 3 2 19 19 C 1.33912 * 124.51579 * 179.69872 * 2 1 3 20 20 Br 1.89095 * 122.45222 * 0.24273 * 19 2 1 21 21 H 1.09000 * 109.46822 * 0.02640 * 1 2 3 22 22 H 1.08993 * 109.47323 * 120.02219 * 1 2 3 23 23 H 1.09002 * 109.47073 * 240.02573 * 1 2 3 24 24 H 1.08997 * 109.47429 * 300.00338 * 8 7 5 25 25 H 1.09006 * 109.47567 * 59.99906 * 8 7 5 26 26 H 1.08999 * 109.46947 * 299.99820 * 9 8 7 27 27 H 1.08992 * 109.47315 * 59.99956 * 9 8 7 28 28 H 0.97001 * 119.99859 * 180.02562 * 13 12 10 29 29 H 1.07998 * 123.36111 * 180.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4739 1.4058 0.0000 4 6 3.9493 0.4495 0.0081 5 6 5.3105 0.9884 0.0114 6 8 6.2636 0.2329 0.0166 7 8 5.5075 2.3230 0.0086 8 6 6.8837 2.7860 0.0115 9 6 6.9070 4.3158 0.0071 10 6 8.3353 4.7965 0.0095 11 1 9.1454 4.0823 0.0142 12 6 8.6079 6.1481 0.0068 13 7 7.6214 7.0178 0.0016 14 14 10.3784 6.7438 0.0090 15 1 11.0733 6.2353 -1.2007 16 1 10.4010 8.2286 0.0061 17 1 11.0682 6.2412 1.2242 18 6 3.6218 -0.8783 0.0098 19 6 2.2658 -1.1034 0.0058 20 35 1.5259 -2.8436 0.0082 21 1 -0.3633 1.0277 -0.0005 22 1 -0.3633 -0.5141 -0.8897 23 1 -0.3633 -0.5134 0.8902 24 1 7.3893 2.4171 0.9039 25 1 7.3947 2.4127 -0.8760 26 1 6.4016 4.6843 -0.8856 27 1 6.3961 4.6896 0.8943 28 1 7.8132 7.9686 -0.0007 29 1 4.3554 -1.6709 0.0150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820475486.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:31 Heat of formation + Delta-G solvation = -84.357811 kcal Electronic energy + Delta-G solvation = -15610.793598 eV Core-core repulsion = 12670.890239 eV Total energy + Delta-G solvation = -2939.903359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.971 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46766 -39.36999 -37.67299 -35.46586 -33.53574 -32.33229 -31.84940 -28.68370 -26.89746 -25.02036 -23.35102 -22.57734 -20.27010 -19.61181 -18.47756 -17.66181 -17.64911 -17.32669 -16.53893 -15.67651 -15.59960 -15.00101 -14.57832 -14.38444 -14.24894 -13.67982 -13.38264 -13.13604 -13.13288 -12.92124 -12.61046 -12.59587 -12.10927 -11.97430 -11.85260 -11.62966 -11.54675 -11.44823 -11.30422 -10.61114 -9.94716 -9.62124 -8.27203 -6.40493 -0.88800 -0.01642 0.35666 0.77573 1.03686 1.41242 1.45093 1.52092 1.62683 1.64602 2.40078 3.07290 3.52385 3.68850 3.88215 4.18538 4.19404 4.31510 4.51733 4.61967 4.65965 4.67797 4.89294 5.11801 5.16604 5.43195 5.44524 5.71325 6.05073 6.51474 6.72328 7.29136 8.85046 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.043318 B = 0.002621 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.233203 B =10681.559133 C =11302.044352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.153 4.153 3 S 0.325 5.675 4 C -0.295 4.295 5 C 0.533 3.467 6 O -0.532 6.532 7 O -0.360 6.360 8 C 0.092 3.908 9 C 0.032 3.968 10 C -0.553 4.553 11 H 0.065 0.935 12 C 0.008 3.992 13 N -0.925 5.925 14 Si 0.973 3.027 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.015 4.015 19 C -0.151 4.151 20 Br -0.007 7.007 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.268 0.732 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.565 -18.640 -0.009 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.276 4.276 3 S 0.593 5.407 4 C -0.414 4.414 5 C 0.379 3.621 6 O -0.424 6.424 7 O -0.277 6.277 8 C 0.019 3.981 9 C -0.005 4.005 10 C -0.590 4.590 11 H 0.083 0.917 12 C -0.191 4.191 13 N -0.563 5.563 14 Si 0.797 3.203 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.049 4.049 19 C -0.242 4.242 20 Br 0.076 6.924 21 H 0.113 0.887 22 H 0.119 0.881 23 H 0.119 0.881 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.884 -17.696 -0.012 26.619 hybrid contribution 1.735 -0.748 0.006 1.890 sum -18.149 -18.444 -0.006 25.876 Atomic orbital electron populations 1.20768 0.83685 1.05499 1.05388 1.25001 1.04211 0.96844 1.01542 1.83591 0.90185 1.03572 1.63317 1.23408 0.95573 0.98481 1.23907 1.20003 0.88607 0.81064 0.72414 1.90834 1.43762 1.59935 1.47870 1.86581 1.34464 1.23099 1.83519 1.23279 0.76772 0.96711 1.01369 1.18985 0.97101 0.87540 0.96906 1.21331 0.92190 0.92701 1.52802 0.91668 1.25943 1.02450 0.96737 0.94017 1.70079 1.33723 1.02385 1.50161 0.85380 0.78533 0.77143 0.79275 1.19109 1.20413 1.19120 1.20629 0.95486 0.94754 0.94031 1.20359 0.93556 0.93694 1.16581 1.96693 1.83335 1.14415 1.97938 0.88712 0.88057 0.88061 0.91857 0.91863 0.97294 0.97292 0.92302 0.82143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.60 71.23 0.68 -0.25 15 2 C -0.15 -2.64 6.28 24.70 0.16 -2.48 15 3 S 0.32 7.08 22.85 -56.49 -1.29 5.79 15 4 C -0.29 -8.56 6.45 24.05 0.16 -8.40 15 5 C 0.53 20.00 7.92 69.94 0.55 20.56 15 6 O -0.53 -22.22 16.63 19.42 0.32 -21.89 15 7 O -0.36 -14.88 10.08 -58.16 -0.59 -15.47 15 8 C 0.09 4.17 5.42 71.98 0.39 4.56 15 9 C 0.03 1.71 5.35 29.85 0.16 1.87 15 10 C -0.55 -31.25 9.11 25.60 0.23 -31.02 15 11 H 0.07 3.52 7.74 -2.91 -0.02 3.50 15 12 C 0.01 0.44 5.46 84.66 0.46 0.90 15 13 N -0.92 -54.90 13.29 21.45 0.28 -54.61 15 14 Si 0.97 43.40 29.54 68.60 2.03 45.42 15 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 16 H -0.28 -12.05 7.11 99.48 0.71 -11.35 15 17 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 18 C -0.01 -0.36 9.86 21.74 0.21 -0.15 15 19 C -0.15 -3.03 6.14 21.10 0.13 -2.90 15 20 Br -0.01 -0.12 33.18 -20.37 -0.68 -0.80 15 21 H 0.09 0.65 8.11 -2.39 -0.02 0.63 15 22 H 0.10 0.81 8.14 -2.39 -0.02 0.79 15 23 H 0.10 0.81 8.14 -2.39 -0.02 0.79 15 24 H 0.06 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.06 2.83 8.14 -2.38 -0.02 2.81 15 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 28 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 29 H 0.16 3.92 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -65.78 299.56 4.39 -61.39 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: 1.17 Total: -2.53 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.14 Total: -17.31 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.28 Total: -54.61 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.26 Total: -37.36 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 7.08 SS G_CDS: -1.29 Total: 5.79 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.68 Total: -0.80 kcal Total: -65.78 4.39 -61.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820475486.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.970 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds