Wall clock time and date at job start Tue Mar 31 2020 12:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 5 5 C 1.46906 * 110.99888 * 84.99977 * 4 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47240 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99962 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00243 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99980 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47195 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46997 * 120.00167 * 12 10 8 15 15 H 1.48500 * 109.47074 * 240.00161 * 12 10 8 16 16 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 17 17 N 1.29040 * 124.91386 * 74.68926 * 16 2 1 18 18 C 1.31805 * 117.12406 * 179.81950 * 17 16 2 19 19 Br 1.89109 * 122.76270 * 180.22905 * 18 17 16 20 20 C 1.33701 * 114.48034 * 0.47512 * 18 17 16 21 21 S 1.70977 * 124.90980 * 255.00252 * 16 2 1 22 22 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 23 23 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 24 24 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 25 25 H 1.00902 * 111.00533 * 321.04383 * 4 2 1 26 26 H 1.09000 * 109.47033 * 300.00113 * 5 4 2 27 27 H 1.09001 * 109.46544 * 60.00058 * 5 4 2 28 28 H 1.09000 * 109.47486 * 299.99976 * 6 5 4 29 29 H 1.09001 * 109.47362 * 60.00699 * 6 5 4 30 30 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 31 31 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 32 32 H 0.96992 * 120.00032 * 179.97438 * 11 10 8 33 33 H 1.08008 * 126.03625 * 179.79418 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5962 -0.5331 -3.5741 7 6 2.6622 0.4201 -4.7692 8 6 3.1677 -0.3242 -5.9781 9 1 3.4165 -1.3724 -5.9019 10 6 3.3114 0.3327 -7.1817 11 7 3.0079 1.6091 -7.2747 12 14 3.9386 -0.5897 -8.6801 13 1 4.2071 -2.0036 -8.3144 14 1 2.9147 -0.5427 -9.7548 15 1 5.1921 0.0439 -9.1626 16 6 2.0324 -0.7104 1.2304 17 7 2.0152 -1.9890 1.4038 18 6 2.4984 -2.4478 2.5410 19 35 2.5569 -4.2912 2.9586 20 6 2.9391 -1.5023 3.3774 21 16 2.7007 0.0617 2.6018 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.4496 -1.4981 -1.4100 26 1 1.0870 0.6162 -2.5525 27 1 2.7589 1.0461 -2.1182 28 1 3.5917 -0.9264 -3.3682 29 1 1.9201 -1.3569 -3.8030 30 1 1.6669 0.8139 -4.9752 31 1 3.3384 1.2437 -4.5401 32 1 3.1094 2.0712 -8.1214 33 1 3.3664 -1.6680 4.3554 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834566094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:37 Heat of formation + Delta-G solvation = 10.524516 kcal Electronic energy + Delta-G solvation = -15895.450868 eV Core-core repulsion = 13127.787761 eV Total energy + Delta-G solvation = -2767.663107 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 318.010 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91053 -38.31238 -35.85254 -34.01475 -32.63689 -31.01605 -29.92149 -27.70666 -26.68860 -24.38695 -23.06320 -21.95678 -20.49857 -19.14201 -18.46163 -17.01561 -16.61601 -16.43848 -16.06475 -15.82242 -15.43924 -14.70906 -14.50926 -14.33323 -13.73766 -13.65358 -13.26783 -12.95458 -12.79480 -12.70135 -12.47976 -12.37354 -12.24587 -11.92553 -11.54097 -11.43906 -11.37881 -11.13029 -10.71851 -10.54479 -10.51002 -9.78731 -9.38715 -8.19664 -6.29928 -0.45748 -0.10373 0.32980 1.00685 1.40130 1.40525 1.50974 1.54078 2.41602 3.11315 3.13556 3.27229 3.84669 4.04904 4.14795 4.18557 4.28182 4.40556 4.54397 4.73158 4.74004 4.83618 5.02011 5.12379 5.17208 5.25606 5.53560 5.77409 5.87683 5.98622 6.28475 6.38620 6.53095 6.86999 7.39146 8.92265 Molecular weight = 318.01amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002618 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.490145 B =10692.572982 C =11613.684010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.157 3.843 3 H 0.111 0.889 4 N -0.682 5.682 5 C 0.075 3.925 6 C -0.093 4.093 7 C 0.027 3.973 8 C -0.543 4.543 9 H 0.056 0.944 10 C 0.000 4.000 11 N -0.932 5.932 12 Si 0.963 3.037 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.056 3.944 17 N -0.473 5.473 18 C 0.041 3.959 19 Br 0.014 6.986 20 C -0.226 4.226 21 S 0.215 5.785 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.348 0.652 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.047 0.953 30 H -0.005 1.005 31 H -0.006 1.006 32 H 0.264 0.736 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -5.843 28.124 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.044 3.956 3 H 0.129 0.871 4 N -0.314 5.314 5 C -0.054 4.054 6 C -0.132 4.132 7 C -0.011 4.011 8 C -0.581 4.581 9 H 0.074 0.926 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.788 3.212 13 H -0.189 1.189 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.224 4.224 17 N -0.188 5.188 18 C -0.171 4.171 19 Br 0.097 6.903 20 C -0.369 4.369 21 S 0.470 5.530 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.168 0.832 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.072 0.928 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.463 -5.594 28.184 28.840 hybrid contribution -0.569 -0.832 -1.182 1.554 sum -3.032 -6.426 27.002 27.921 Atomic orbital electron populations 1.22407 0.93650 1.03026 1.03819 1.20183 0.94354 0.96254 0.84851 0.87091 1.60328 1.57976 1.09898 1.03201 1.21899 0.99442 0.94918 0.89148 1.21372 1.00017 0.98119 0.93647 1.18954 0.95031 0.94422 0.92644 1.21734 1.43687 0.96782 0.95920 0.92608 1.25947 0.95700 0.95793 1.02307 1.70089 1.49915 1.10544 1.26689 0.85429 0.78069 0.78955 0.78783 1.18887 1.20237 1.20274 1.27220 1.01759 0.91870 1.01522 1.65910 1.18819 1.13782 1.20284 1.21847 1.07054 0.94923 0.93228 1.96749 1.97846 1.03735 1.92003 1.27386 1.08394 0.94235 1.06865 1.83839 1.53838 1.07510 1.07845 0.90082 0.90986 0.92336 0.83243 0.94616 0.91233 0.93416 0.93423 0.98698 0.98738 0.92751 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 9.14 71.98 0.66 -2.55 16 2 C 0.16 3.50 3.09 44.17 0.14 3.63 16 3 H 0.11 2.18 7.80 -2.39 -0.02 2.16 16 4 N -0.68 -19.51 6.20 -495.45 -3.07 -22.58 16 5 C 0.07 2.44 5.48 86.30 0.47 2.92 16 6 C -0.09 -3.90 5.41 30.60 0.17 -3.74 16 7 C 0.03 1.44 4.97 29.85 0.15 1.58 16 8 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 9 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 10 C 0.00 0.01 5.46 84.65 0.46 0.47 16 11 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 12 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 C 0.06 1.27 6.25 88.52 0.55 1.82 16 17 N -0.47 -12.29 10.51 -186.38 -1.96 -14.25 16 18 C 0.04 0.91 7.18 83.67 0.60 1.51 16 19 Br 0.01 0.29 33.99 -20.37 -0.69 -0.40 16 20 C -0.23 -3.71 11.20 66.79 0.75 -2.96 16 21 S 0.21 3.38 23.18 -56.49 -1.31 2.07 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.38 7.45 -2.39 -0.02 1.36 16 24 H 0.06 1.23 8.13 -2.38 -0.02 1.21 16 25 H 0.35 10.13 8.47 -89.69 -0.76 9.37 16 26 H 0.04 1.12 7.44 -2.39 -0.02 1.10 16 27 H 0.07 2.26 8.06 -2.39 -0.02 2.24 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -66.65 317.49 -0.19 -66.84 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.35 Total: 6.59 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 4.18 Total: -28.60 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -4.75 Total: -93.41 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.31 Total: 2.07 kcal Atomic # 35 Polarization: 0.29 SS G_CDS: -0.69 Total: -0.40 kcal Total: -66.65 -0.19 -66.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834566094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.367 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds