Wall clock time and date at job start Tue Mar 31 2020 11:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47372 * 119.99935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 240.00168 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34812 * 116.99720 * 89.99471 * 13 3 2 15 15 O 1.21571 * 120.00710 * 0.02562 * 14 13 3 16 16 C 1.46918 * 119.99496 * 180.02562 * 14 13 3 17 17 C 1.44527 * 123.50049 * 0.02562 * 16 14 13 18 18 C 1.32685 * 113.09797 * 179.97438 * 17 16 14 19 19 S 1.75490 * 110.64439 * 359.97438 * 18 17 16 20 20 C 1.36274 * 123.49975 * 179.70375 * 16 14 13 21 21 Br 1.89110 * 124.60418 * 0.02562 * 20 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 28 28 H 1.07990 * 123.44922 * 359.95828 * 17 16 14 29 29 H 1.08003 * 124.67506 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 8 1.6559 2.0917 -1.2407 14 6 0.4676 2.7281 -1.2559 15 8 -0.2283 2.7405 -0.2592 16 6 0.0136 3.4069 -2.4773 17 6 0.7784 3.4394 -3.7031 18 6 0.1738 4.1087 -4.6763 19 16 -1.3724 4.7333 -4.1297 20 6 -1.1753 4.0659 -2.5738 21 35 -2.4339 4.2216 -1.1710 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0605 2.9503 28 1 1.7433 2.9675 -3.8154 29 1 0.5776 4.2495 -5.6680 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340412.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:49 Heat of formation + Delta-G solvation = -54.039333 kcal Electronic energy + Delta-G solvation = -16754.345009 eV Core-core repulsion = 13815.756357 eV Total energy + Delta-G solvation = -2938.588651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.971 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67861 -37.24877 -35.58094 -33.46292 -31.89167 -31.33840 -28.85086 -27.34212 -25.03967 -23.05705 -21.61999 -20.08093 -18.98718 -17.96854 -16.83600 -16.15373 -15.75933 -15.29826 -14.64917 -13.92784 -13.53642 -13.16924 -13.05951 -12.78493 -12.66569 -12.01900 -11.44886 -11.39895 -11.16593 -11.13518 -10.97433 -10.91480 -10.62436 -10.55366 -10.22566 -9.73755 -9.41128 -9.21376 -8.86525 -8.77815 -8.58663 -8.43953 -6.18099 -4.24947 0.47790 0.94128 1.56286 1.81977 1.98535 3.23540 3.30453 3.34998 3.58168 3.74288 4.34324 4.78846 5.06841 5.14048 5.45914 5.88026 5.97030 6.14199 6.26312 6.33679 6.49074 6.89557 6.98815 7.19326 7.24915 7.62191 7.74929 7.94151 8.16198 8.62536 8.88986 9.40100 10.88710 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.022406 B = 0.004578 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.345197 B = 6115.117795 C = 6825.116251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.348 6.348 14 C 0.504 3.496 15 O -0.488 6.488 16 C -0.097 4.097 17 C -0.084 4.084 18 C -0.230 4.230 19 S 0.218 5.782 20 C -0.186 4.186 21 Br 0.041 6.959 22 H 0.031 0.969 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.109 0.891 26 H 0.041 0.959 27 H 0.266 0.734 28 H 0.166 0.834 29 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 8.121 -12.580 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.264 6.264 14 C 0.346 3.654 15 O -0.378 6.378 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.366 4.366 19 S 0.482 5.518 20 C -0.385 4.385 21 Br 0.125 6.875 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.127 0.873 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.183 0.817 29 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.597 8.911 -12.249 19.701 hybrid contribution 2.319 -1.025 0.666 2.621 sum -10.278 7.886 -11.582 17.378 Atomic orbital electron populations 1.21856 0.98296 0.98980 1.00840 1.22016 0.92690 0.99290 1.03317 1.20712 0.95001 0.88749 0.78517 0.93343 1.21069 0.89628 1.38867 1.06246 0.91296 1.24881 0.99197 0.94795 0.95079 1.69901 1.35264 1.37878 1.09435 0.86240 0.83954 0.77857 0.78209 1.19497 1.20774 1.20736 1.86551 1.33249 1.62396 1.44212 1.20056 0.81555 0.77416 0.86420 1.90891 1.54908 1.57669 1.34321 1.19773 0.93936 1.02424 0.95441 1.21388 1.01175 0.98894 0.89846 1.25609 0.99578 1.06867 1.04515 1.82946 1.18325 1.51475 0.99092 1.26151 1.00644 1.09433 1.02249 1.96779 1.50255 1.96600 1.43839 0.94945 0.92721 0.94886 0.87332 0.94023 0.92451 0.81654 0.80702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.56 37.16 0.32 -2.84 15 2 C -0.14 -3.36 5.49 -26.74 -0.15 -3.51 15 3 C 0.22 5.89 2.25 -27.89 -0.06 5.83 15 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 15 5 C -0.52 -14.45 8.90 -34.44 -0.31 -14.75 15 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 15 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 15 8 N -0.89 -24.95 11.29 55.43 0.63 -24.32 15 9 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 15 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 13 O -0.35 -8.25 9.53 -40.80 -0.39 -8.64 15 14 C 0.50 10.83 6.37 34.24 0.22 11.05 15 15 O -0.49 -11.25 11.72 -19.32 -0.23 -11.47 15 16 C -0.10 -1.66 5.98 -104.61 -0.63 -2.28 15 17 C -0.08 -1.16 10.13 -39.00 -0.40 -1.55 15 18 C -0.23 -2.40 11.11 28.84 0.32 -2.08 15 19 S 0.22 2.32 23.01 -107.50 -2.47 -0.15 15 20 C -0.19 -2.80 6.76 30.03 0.20 -2.60 15 21 Br 0.04 0.62 31.66 -68.01 -2.15 -1.53 15 22 H 0.03 0.70 6.06 -51.93 -0.31 0.38 15 23 H 0.05 1.27 7.79 -51.93 -0.40 0.86 15 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.11 2.92 5.95 -51.93 -0.31 2.61 15 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.27 7.03 8.31 -40.82 -0.34 6.70 15 28 H 0.17 2.18 8.06 -52.49 -0.42 1.76 15 29 H 0.18 1.22 8.06 -52.48 -0.42 0.80 15 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -29.76 284.41 -8.56 -38.32 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -2.64 Total: -1.30 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -0.57 Total: -11.12 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.62 Total: -20.11 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.15 kcal Atomic # 35 Polarization: 0.62 SS G_CDS: -2.15 Total: -1.53 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.76 -8.56 -38.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340412.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.719 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds