Wall clock time and date at job start Tue Mar 31 2020 11:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47372 * 119.99935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 240.00168 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34812 * 116.99720 * 89.99471 * 13 3 2 15 15 O 1.21571 * 120.00710 * 0.02562 * 14 13 3 16 16 C 1.46918 * 119.99496 * 180.02562 * 14 13 3 17 17 C 1.44527 * 123.50049 * 0.02562 * 16 14 13 18 18 C 1.32685 * 113.09797 * 179.97438 * 17 16 14 19 19 S 1.75490 * 110.64439 * 359.97438 * 18 17 16 20 20 C 1.36274 * 123.49975 * 179.70375 * 16 14 13 21 21 Br 1.89110 * 124.60418 * 0.02562 * 20 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 28 28 H 1.07990 * 123.44922 * 359.95828 * 17 16 14 29 29 H 1.08003 * 124.67506 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 8 1.6559 2.0917 -1.2407 14 6 0.4676 2.7281 -1.2559 15 8 -0.2283 2.7405 -0.2592 16 6 0.0136 3.4069 -2.4773 17 6 0.7784 3.4394 -3.7031 18 6 0.1738 4.1087 -4.6763 19 16 -1.3724 4.7333 -4.1297 20 6 -1.1753 4.0659 -2.5738 21 35 -2.4339 4.2216 -1.1710 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0605 2.9503 28 1 1.7433 2.9675 -3.8154 29 1 0.5776 4.2495 -5.6680 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835340412.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:49 Heat of formation + Delta-G solvation = -70.513404 kcal Electronic energy + Delta-G solvation = -16755.059378 eV Core-core repulsion = 13815.756357 eV Total energy + Delta-G solvation = -2939.303021 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 317.971 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.34609 -38.54316 -37.29649 -35.46307 -33.34081 -33.01039 -30.05151 -29.27798 -26.49531 -24.94899 -22.93146 -21.87301 -20.56677 -19.10873 -18.74234 -17.78558 -17.28569 -17.03549 -16.50754 -15.28373 -14.87223 -14.77671 -14.54521 -14.11059 -13.94669 -13.74129 -13.33924 -13.27058 -13.08617 -12.81644 -12.55963 -12.19220 -12.14429 -12.02708 -11.86998 -11.69396 -11.39024 -10.82477 -10.70928 -10.50547 -9.92176 -9.55151 -8.26655 -6.43166 -0.68319 -0.09292 0.47175 0.84080 0.85041 1.42172 1.42552 1.56379 2.06051 2.11029 2.45034 3.03100 3.74900 3.90548 4.23836 4.37966 4.40060 4.56600 4.74109 4.85196 4.95744 5.08985 5.12087 5.22452 5.37564 5.51938 5.67668 5.96947 6.11825 6.61450 6.98619 7.28138 8.80383 Molecular weight = 317.97amu Principal moments of inertia in cm(-1) A = 0.022406 B = 0.004578 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.345197 B = 6115.117795 C = 6825.116251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.271 1.271 13 O -0.355 6.355 14 C 0.497 3.503 15 O -0.514 6.514 16 C -0.132 4.132 17 C -0.109 4.109 18 C -0.204 4.204 19 S 0.314 5.686 20 C -0.208 4.208 21 Br 0.027 6.973 22 H 0.033 0.967 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.270 0.730 28 H 0.164 0.836 29 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 8.890 -15.153 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.025 0.975 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.197 1.197 13 O -0.272 6.272 14 C 0.341 3.659 15 O -0.406 6.406 16 C -0.152 4.152 17 C -0.136 4.136 18 C -0.340 4.340 19 S 0.579 5.421 20 C -0.407 4.407 21 Br 0.112 6.888 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.181 0.819 29 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.460 9.692 -14.848 21.671 hybrid contribution 2.143 -1.152 1.356 2.785 sum -10.318 8.540 -13.491 19.011 Atomic orbital electron populations 1.21689 0.96364 1.00424 1.00015 1.21854 0.94345 0.98105 1.02288 1.20384 0.94534 0.89198 0.78463 0.97457 1.21346 0.90426 1.39839 1.06897 0.91599 1.25796 1.04187 0.93912 0.94361 1.70024 1.37331 1.38002 1.09839 0.85166 0.77772 0.78304 0.78355 1.18726 1.20270 1.19665 1.86528 1.35000 1.63069 1.42594 1.20848 0.80360 0.76822 0.87919 1.90861 1.55222 1.58684 1.35805 1.19666 0.95861 1.04762 0.94960 1.21321 1.01651 1.01162 0.89504 1.26136 0.98879 1.03690 1.05307 1.82688 1.16886 1.47992 0.94566 1.26539 0.99886 1.09774 1.04516 1.96756 1.50159 1.96568 1.45354 0.94791 0.94460 0.92146 0.89493 0.93630 0.92073 0.81864 0.76307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.56 71.98 0.62 -5.18 15 2 C -0.13 -6.57 5.49 30.59 0.17 -6.40 15 3 C 0.23 12.60 2.25 29.85 0.07 12.67 15 4 H 0.01 0.48 7.16 -2.39 -0.02 0.46 15 5 C -0.55 -31.34 8.90 25.60 0.23 -31.11 15 6 H 0.07 3.70 7.81 -2.91 -0.02 3.68 15 7 C 0.02 0.95 5.29 84.65 0.45 1.40 15 8 N -0.91 -52.69 11.29 21.45 0.24 -52.45 15 9 Si 0.98 43.12 29.54 68.60 2.03 45.15 15 10 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 13 O -0.36 -17.56 9.53 -57.24 -0.55 -18.11 15 14 C 0.50 22.16 6.37 70.09 0.45 22.60 15 15 O -0.51 -24.87 11.72 19.60 0.23 -24.64 15 16 C -0.13 -4.51 5.98 -19.86 -0.12 -4.63 15 17 C -0.11 -2.81 10.13 22.70 0.23 -2.58 15 18 C -0.20 -3.42 11.11 66.65 0.74 -2.68 15 19 S 0.31 5.51 23.01 -56.49 -1.30 4.21 15 20 C -0.21 -6.01 6.76 67.36 0.46 -5.56 15 21 Br 0.03 0.82 31.66 -20.37 -0.64 0.18 15 22 H 0.03 1.50 6.06 -2.39 -0.01 1.48 15 23 H 0.04 1.79 7.79 -2.39 -0.02 1.77 15 24 H 0.06 2.36 8.14 -2.38 -0.02 2.34 15 25 H 0.09 4.85 5.95 -2.39 -0.01 4.84 15 26 H 0.04 2.25 8.14 -2.39 -0.02 2.23 15 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 15 28 H 0.16 4.19 8.06 -2.92 -0.02 4.17 15 29 H 0.22 1.71 8.06 -2.91 -0.02 1.69 15 Total: -1.00 -67.62 284.41 4.47 -63.15 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.18 Total: 3.99 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 3.28 Total: -21.48 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.24 Total: -52.45 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.32 Total: -42.75 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.30 Total: 4.21 kcal Atomic # 35 Polarization: 0.82 SS G_CDS: -0.64 Total: 0.18 kcal Total: -67.62 4.47 -63.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340412.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.365 kcal (2) G-P(sol) polarization free energy of solvation -67.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds