Wall clock time and date at job start Tue Mar 31 2020 12:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46956 * 269.99556 * 3 2 1 5 5 H 1.48494 * 109.47327 * 29.99830 * 3 2 1 6 6 H 1.48501 * 109.47241 * 149.99918 * 3 2 1 7 7 C 1.37874 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 H 1.09003 * 109.47030 * 54.71768 * 14 12 11 16 16 O 1.42896 * 109.47609 * 174.72205 * 14 12 11 17 17 C 1.50699 * 109.46803 * 294.72308 * 14 12 11 18 18 C 1.38272 * 119.97901 * 279.72038 * 17 14 12 19 19 C 1.38202 * 120.03497 * 179.72666 * 18 17 14 20 20 C 1.38345 * 120.00581 * 0.55108 * 19 18 17 21 21 Cl 1.73598 * 120.02346 * 179.75000 * 20 19 18 22 22 C 1.38447 * 119.95893 * 359.72493 * 20 19 18 23 23 Cl 1.73599 * 120.02253 * 180.02562 * 22 20 19 24 24 C 1.38205 * 119.98476 * 100.00031 * 17 14 12 25 25 H 0.97002 * 119.99857 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 27 27 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 28 28 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 29 29 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 30 30 H 0.96701 * 114.00176 * 59.99659 * 16 14 12 31 31 H 1.07997 * 119.97994 * 359.97438 * 18 17 14 32 32 H 1.08008 * 119.99652 * 180.25783 * 19 18 17 33 33 H 1.07997 * 119.99728 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0017 13 8 5.4247 -4.8460 0.0008 14 6 7.5877 -3.9116 0.0091 15 1 7.9773 -3.3404 0.8517 16 8 7.9925 -5.2766 0.1310 17 6 8.1269 -3.3407 -1.2771 18 6 8.1318 -4.1099 -2.4261 19 6 8.6208 -3.5856 -3.6076 20 6 9.1163 -2.2943 -3.6386 21 17 9.7367 -1.6374 -5.1210 22 6 9.1167 -1.5260 -2.4869 23 17 9.7374 0.0948 -2.5242 24 6 8.6215 -2.0505 -1.3063 25 1 -0.4850 0.8401 0.0004 26 1 3.8744 -0.6801 0.8911 27 1 3.8751 -0.6804 -0.8888 28 1 3.6584 -3.1503 -0.8892 29 1 3.6577 -3.1506 0.8908 30 1 7.6805 -5.8450 -0.5864 31 1 7.7496 -5.1197 -2.4011 32 1 8.6205 -4.1856 -4.5056 33 1 8.6219 -1.4519 -0.4074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838144167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:43 Heat of formation + Delta-G solvation = -131.246615 kcal Electronic energy + Delta-G solvation = -21377.675171 eV Core-core repulsion = 17648.122540 eV Total energy + Delta-G solvation = -3729.552631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88529 -39.64611 -37.62049 -36.86441 -36.70210 -35.94319 -33.40682 -32.17463 -31.24852 -30.79889 -27.79613 -25.16534 -23.49308 -22.75452 -21.14059 -20.69370 -18.48281 -18.12718 -17.22027 -16.83011 -16.70490 -16.14826 -15.91966 -15.36694 -14.58246 -14.43855 -14.28033 -14.18192 -13.64902 -13.44839 -13.03920 -12.61230 -12.47851 -12.21043 -12.15380 -11.86453 -11.62995 -11.52622 -11.35810 -11.27336 -11.13703 -10.77992 -10.64386 -10.06120 -9.97553 -9.81188 -9.41548 -9.36848 -9.04844 -8.66932 -6.17499 -4.19300 0.41425 0.65317 1.47508 1.82013 2.16676 2.69584 3.00479 3.24754 3.32458 3.35874 3.90090 3.99646 4.15401 4.34444 4.52571 4.62151 4.72882 4.83563 5.00547 5.16081 5.27892 5.42775 5.53753 5.78238 5.82661 5.86106 6.06384 6.34681 6.59130 6.96993 7.07887 7.13969 7.56063 7.85015 8.34150 8.83576 9.41827 10.94992 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.003991 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.000082 B = 7014.334134 C = 8589.654058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.353 6.353 12 C 0.431 3.569 13 O -0.501 6.501 14 C 0.163 3.837 15 H 0.150 0.850 16 O -0.522 6.522 17 C -0.102 4.102 18 C -0.090 4.090 19 C -0.094 4.094 20 C -0.025 4.025 21 Cl -0.047 7.047 22 C -0.028 4.028 23 Cl -0.043 7.043 24 C -0.069 4.069 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.385 0.615 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.290 -5.834 -6.459 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.010 3.990 11 O -0.269 6.269 12 C 0.272 3.728 13 O -0.389 6.389 14 C 0.102 3.898 15 H 0.167 0.833 16 O -0.328 6.328 17 C -0.103 4.103 18 C -0.109 4.109 19 C -0.113 4.113 20 C -0.052 4.052 21 Cl -0.017 7.017 22 C -0.056 4.056 23 Cl -0.013 7.013 24 C -0.088 4.088 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.235 0.765 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 23.268 -5.565 -6.062 24.681 hybrid contribution -0.104 0.845 -0.696 1.100 sum 23.164 -4.720 -6.758 24.587 Atomic orbital electron populations 1.69890 1.06288 1.27276 1.49891 1.24920 0.94754 0.99157 0.94036 0.86774 0.80455 0.83322 0.78821 1.20006 1.21087 1.18722 1.20818 0.88185 0.95065 1.52671 0.90647 1.19625 0.97080 0.89939 0.97951 1.23469 0.71763 1.01887 1.01915 1.86494 1.26722 1.31539 1.82182 1.24197 0.92124 0.82936 0.73515 1.90685 1.66580 1.36618 1.45039 1.20262 0.87234 0.85238 0.97034 0.83307 1.86699 1.76058 1.17119 1.52927 1.20136 1.00045 0.94667 0.95490 1.20976 0.98159 1.00422 0.91313 1.20981 0.98009 0.93035 0.99267 1.20855 1.02194 0.94615 0.87571 1.98401 1.85349 1.85779 1.32213 1.20719 1.02695 0.88229 0.93955 1.98408 1.85283 1.18953 1.98692 1.20888 0.96061 0.94586 0.97297 0.92367 0.95298 0.95793 0.91610 0.91452 0.76494 0.84267 0.83497 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.53 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.01 -0.20 4.42 -27.89 -0.12 -0.32 16 10 C 0.08 1.68 5.40 37.15 0.20 1.88 16 11 O -0.35 -6.14 10.21 -39.26 -0.40 -6.54 16 12 C 0.43 6.47 7.25 36.00 0.26 6.73 16 13 O -0.50 -8.78 16.07 -25.47 -0.41 -9.19 16 14 C 0.16 1.72 3.73 -29.04 -0.11 1.62 16 15 H 0.15 1.27 8.00 -51.93 -0.42 0.86 16 16 O -0.52 -5.27 12.84 -55.13 -0.71 -5.98 16 17 C -0.10 -1.01 4.95 -104.62 -0.52 -1.53 16 18 C -0.09 -0.78 9.32 -39.58 -0.37 -1.15 16 19 C -0.09 -0.80 9.83 -39.56 -0.39 -1.19 16 20 C -0.02 -0.25 6.32 -39.47 -0.25 -0.50 16 21 Cl -0.05 -0.45 27.96 -51.86 -1.45 -1.90 16 22 C -0.03 -0.30 6.32 -39.46 -0.25 -0.55 16 23 Cl -0.04 -0.45 27.96 -51.86 -1.45 -1.90 16 24 C -0.07 -0.69 9.45 -39.55 -0.37 -1.07 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 27 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 28 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 29 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 30 H 0.38 2.90 7.24 45.56 0.33 3.23 16 31 H 0.14 0.88 6.77 -52.49 -0.36 0.52 16 32 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.15 1.28 8.04 -52.49 -0.42 0.86 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -32.16 324.81 -8.25 -40.41 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.83 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.35 Total: -9.20 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.25 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.52 Total: -21.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -2.90 Total: -3.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.16 -8.25 -40.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838144167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.834 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds