Wall clock time and date at job start Tue Mar 31 2020 12:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46956 * 269.99556 * 3 2 1 5 5 H 1.48494 * 109.47327 * 29.99830 * 3 2 1 6 6 H 1.48501 * 109.47241 * 149.99918 * 3 2 1 7 7 C 1.37874 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 H 1.09003 * 109.47030 * 54.71768 * 14 12 11 16 16 O 1.42896 * 109.47609 * 174.72205 * 14 12 11 17 17 C 1.50699 * 109.46803 * 294.72308 * 14 12 11 18 18 C 1.38272 * 119.97901 * 279.72038 * 17 14 12 19 19 C 1.38202 * 120.03497 * 179.72666 * 18 17 14 20 20 C 1.38345 * 120.00581 * 0.55108 * 19 18 17 21 21 Cl 1.73598 * 120.02346 * 179.75000 * 20 19 18 22 22 C 1.38447 * 119.95893 * 359.72493 * 20 19 18 23 23 Cl 1.73599 * 120.02253 * 180.02562 * 22 20 19 24 24 C 1.38205 * 119.98476 * 100.00031 * 17 14 12 25 25 H 0.97002 * 119.99857 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 27 27 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 28 28 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 29 29 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 30 30 H 0.96701 * 114.00176 * 59.99659 * 16 14 12 31 31 H 1.07997 * 119.97994 * 359.97438 * 18 17 14 32 32 H 1.08008 * 119.99652 * 180.25783 * 19 18 17 33 33 H 1.07997 * 119.99728 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6366 0.0022 12 6 6.0828 -3.8326 0.0017 13 8 5.4247 -4.8460 0.0008 14 6 7.5877 -3.9116 0.0091 15 1 7.9773 -3.3404 0.8517 16 8 7.9925 -5.2766 0.1310 17 6 8.1269 -3.3407 -1.2771 18 6 8.1318 -4.1099 -2.4261 19 6 8.6208 -3.5856 -3.6076 20 6 9.1163 -2.2943 -3.6386 21 17 9.7367 -1.6374 -5.1210 22 6 9.1167 -1.5260 -2.4869 23 17 9.7374 0.0948 -2.5242 24 6 8.6215 -2.0505 -1.3063 25 1 -0.4850 0.8401 0.0004 26 1 3.8744 -0.6801 0.8911 27 1 3.8751 -0.6804 -0.8888 28 1 3.6584 -3.1503 -0.8892 29 1 3.6577 -3.1506 0.8908 30 1 7.6805 -5.8450 -0.5864 31 1 7.7496 -5.1197 -2.4011 32 1 8.6205 -4.1856 -4.5056 33 1 8.6219 -1.4519 -0.4074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838144167.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:43 Heat of formation + Delta-G solvation = -150.649150 kcal Electronic energy + Delta-G solvation = -21378.516528 eV Core-core repulsion = 17648.122540 eV Total energy + Delta-G solvation = -3730.393988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 318.026 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96223 -40.56395 -38.58339 -37.68515 -37.60511 -36.99342 -35.41967 -33.14879 -32.56145 -31.92717 -28.82180 -26.92277 -24.18314 -23.73899 -22.68904 -22.04588 -19.50394 -19.23750 -18.75093 -18.08089 -17.78815 -17.15952 -17.04783 -16.35186 -16.14591 -15.54613 -15.24327 -15.02217 -14.94784 -14.78477 -14.46271 -13.84678 -13.42809 -13.31168 -13.16200 -12.96000 -12.88760 -12.75986 -12.52008 -12.42458 -12.28557 -11.99876 -11.92239 -11.82902 -11.56038 -11.47521 -11.25515 -10.82171 -10.08510 -9.81109 -8.35343 -6.43428 -0.32769 -0.03861 0.73346 0.94919 1.12498 1.37616 1.38737 1.50637 1.53111 2.23912 2.33135 2.99992 3.14209 3.19408 3.49332 3.56253 3.86795 3.93508 4.06407 4.15105 4.16021 4.30405 4.60600 4.64017 4.72095 4.86930 4.99375 5.08614 5.27760 5.38686 5.45770 5.51058 6.14291 6.28190 6.58435 6.63098 7.21899 8.80720 Molecular weight = 318.03amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.003991 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.000082 B = 7014.334134 C = 8589.654058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.543 4.543 8 H 0.036 0.964 9 C -0.003 4.003 10 C 0.093 3.907 11 O -0.352 6.352 12 C 0.430 3.570 13 O -0.528 6.528 14 C 0.180 3.820 15 H 0.173 0.827 16 O -0.524 6.524 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.094 4.094 20 C -0.034 4.034 21 Cl -0.048 7.048 22 C -0.044 4.044 23 Cl -0.049 7.049 24 C -0.074 4.074 25 H 0.270 0.730 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.396 0.604 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.572 -5.497 -6.614 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.165 1.165 7 C -0.580 4.580 8 H 0.054 0.946 9 C -0.040 4.040 10 C 0.020 3.980 11 O -0.268 6.268 12 C 0.273 3.727 13 O -0.418 6.418 14 C 0.119 3.881 15 H 0.190 0.810 16 O -0.332 6.332 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.062 4.062 21 Cl -0.019 7.019 22 C -0.071 4.071 23 Cl -0.020 7.020 24 C -0.092 4.092 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.248 0.752 31 H 0.180 0.820 32 H 0.187 0.813 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 25.579 -5.257 -6.222 26.844 hybrid contribution -0.820 0.590 -0.681 1.218 sum 24.758 -4.667 -6.903 26.123 Atomic orbital electron populations 1.70037 1.08319 1.28595 1.51387 1.25906 0.95600 1.03429 0.93450 0.85677 0.79744 0.77948 0.79496 1.19002 1.20646 1.16459 1.21120 0.90787 0.93763 1.52368 0.94574 1.19452 0.94091 0.92027 0.98478 1.22970 0.74000 0.99797 1.01214 1.86478 1.24509 1.33151 1.82689 1.25239 0.93851 0.81609 0.71974 1.90679 1.67653 1.37242 1.46225 1.20311 0.83422 0.85919 0.98451 0.80963 1.86701 1.75613 1.17096 1.53778 1.20115 1.00753 0.94873 0.95485 1.21307 0.97264 1.01351 0.90853 1.21266 0.97143 0.92643 1.00158 1.21071 1.02412 0.95225 0.87469 1.98400 1.85389 1.85893 1.32226 1.20848 1.03548 0.88222 0.94493 1.98402 1.85428 1.19414 1.98720 1.21063 0.95760 0.94782 0.97643 0.92068 0.94478 0.94928 0.92390 0.92267 0.75193 0.82036 0.81308 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.95 42.78 27.47 68.60 1.88 44.67 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 7 C -0.54 -30.78 9.66 25.60 0.25 -30.54 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 9 C 0.00 -0.14 4.42 29.85 0.13 -0.01 16 10 C 0.09 3.78 5.40 71.98 0.39 4.17 16 11 O -0.35 -11.63 10.21 -51.41 -0.53 -12.15 16 12 C 0.43 12.10 7.25 71.23 0.52 12.61 16 13 O -0.53 -17.91 16.07 28.36 0.46 -17.45 16 14 C 0.18 3.30 3.73 29.10 0.11 3.40 16 15 H 0.17 2.36 8.00 -2.39 -0.02 2.34 16 16 O -0.52 -9.10 12.84 -129.95 -1.67 -10.77 16 17 C -0.11 -1.89 4.95 -19.86 -0.10 -1.99 16 18 C -0.09 -1.29 9.32 22.27 0.21 -1.09 16 19 C -0.09 -1.36 9.83 22.29 0.22 -1.14 16 20 C -0.03 -0.62 6.32 22.34 0.14 -0.48 16 21 Cl -0.05 -0.86 27.96 -2.72 -0.08 -0.94 16 22 C -0.04 -0.84 6.32 22.35 0.14 -0.70 16 23 Cl -0.05 -0.96 27.96 -2.72 -0.08 -1.04 16 24 C -0.07 -1.30 9.45 22.29 0.21 -1.09 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.04 1.65 7.20 -2.39 -0.02 1.63 16 27 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 28 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 29 H 0.06 2.46 8.13 -2.38 -0.02 2.44 16 30 H 0.40 4.85 7.24 -74.06 -0.54 4.32 16 31 H 0.16 1.52 6.77 -2.91 -0.02 1.50 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.16 2.35 8.04 -2.91 -0.02 2.33 16 Total: -1.00 -69.56 324.81 3.55 -66.01 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.57 Total: 5.02 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 2.68 Total: -15.57 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.30 Total: -57.79 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.74 Total: -40.37 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.15 Total: -1.98 kcal Total: -69.56 3.55 -66.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838144167.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.637 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds